>SSG387 (SSG387Q) /CSM/SS/SSG3-D/SSG387Q.Seq.d/
XXXXXXXXXXTAAAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAAT
AAAAAAAAAAACTTTTAAAACTCTCCCTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCT
AAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGC
TCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTC
TCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTT

---kkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSS
TNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI

Frame A:
---kkv*kknkk**kikkk*kkkllklslyflvllls*c*gvslplcfallssssdnlel
h*rcsssilrvnpshsyatlsnv*avfnkkky


Frame B:
---kkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSS
TNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI


Frame C:
---kslkkk*kiiknkkkikkktfktlpllfgasvklmlrclsppllcitllklr*srap
ltmllkypqg*sitflcnslkcissl*qkkif

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG387 (SSG387Q) /CSM/SS/SSG3-D/SSG387Q.Seq.d/                        387   e-107
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        379   e-104
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        379   e-104
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        379   e-104
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        379   e-104
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        379   e-104
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        379   e-104
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        379   e-104
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        379   e-104
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        379   e-104

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   379  e-101  1
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.014  1
AC132496|AC132496.3 Rattus norvegicus clone CH230-374P21, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40  1.2  2
AC097207|AC097207.7 Rattus norvegicus clone CH230-42K23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  1.2  2
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  3.4  1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  3.4  1
AZ122113|AZ122113.1 RPCI-23-450O17.TV RPCI-23 Mus musculus genomic clone RPCI-23-450O17, genomic survey sequence.    36  3.7  2
AC137335|AC137335.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  5.9  3
AC141885|AC141885.2 Mus musculus chromosome UNK clone RP24-104I20, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40     14  1
BQ562327|BQ562327.1 H4075D02-5 NIA Mouse 7.4K cDNA Clone Set Mus musculus cDNA clone H4075D02 5', mRNA sequence.    40     14  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   8.9

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSG387 is cyt

>SSG387Z.Seq
----------TAAAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAAT
AAAAAAAAAAACTTTTAAAACTCTCCCTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCT
AAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGC
TCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTC
TCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTT