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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG374
Library SS
(Link to library)
Clone ID SSG374
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12223-1
Original site URL
Representative seq. ID SSG374Z
(Link to Original site)
Representative DNA sequence 
>SSG374 (SSG374Q) /CSM/SS/SSG3-D/SSG374Q.Seq.d/
XXXXXXXXXXCTTATCGGAAAATGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGA
TGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTA
AACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATG
ATTAATCNTCNTAAAAATAATAATAATAATAATTAATTCATTATTATTATTATTATTATC
ATTATCATCATCAGATTTAAATTTATAAAAAAAAATAAATAAAAAAAAAAAAAACTTATT
ATTATTTTTTTACTAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 3.21
Translated Amino Acid sequence 
---LSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD
*ss*k*****lihyyyyyyhyhhqi*iykkk*ikkkktyyyfftkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---LSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD
*ss*k*****lihyyyyyyhyhhqi*iykkk*ikkkktyyyfftkkkkkkk


Frame B:
---yrkmkn*klklktlkrwkknikl*nlklkiqpknilnskkniinf*vknqklkrkmi
nxxknnnnnn*fiiiiiiiiiiirfkfikknk*kkkkliiifllkkkkkkk


Frame C:
---igk*kikn*n*rp*kdgkrt*syeiss*kynqris*tprri*stfr*ktknsker*l
ixxkiiiiiinsllllllslsssdlnl*kkinkkkknlllffy*kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF120 (VSF120Q) /CSM/VS/VSF1-A/VSF120Q.Seq.d/                        186   1e-46
VSB721 (VSB721Q) /CSM/VS/VSB7-A/VSB721Q.Seq.d/                        186   1e-46
VSA222 (VSA222Q) /CSM/VS/VSA2-A/VSA222Q.Seq.d/                        186   1e-46
SSK705 (SSK705Q) /CSM/SS/SSK7-A/SSK705Q.Seq.d/                        186   1e-46
SSI891 (SSI891Q) /CSM/SS/SSI8-D/SSI891Q.Seq.d/                        186   1e-46
SSH311 (SSH311Q) /CSM/SS/SSH3-A/SSH311Q.Seq.d/                        186   1e-46
SSG374 (SSG374Q) /CSM/SS/SSG3-D/SSG374Q.Seq.d/                        186   1e-46
SLJ523 (SLJ523Q) /CSM/SL/SLJ5-A/SLJ523Q.Seq.d/                        186   1e-46
SLH256 (SLH256Q) /CSM/SL/SLH2-C/SLH256Q.Seq.d/                        186   1e-46
SSI190 (SSI190Q) /CSM/SS/SSI1-D/SSI190Q.Seq.d/                        180   9e-45
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE006357|AE006357.1 Lactococcus lactis subsp. lactis IL1403 section 119 of 218 of the complete genome.    44  1.1  1
AC015537|AC015537.3 Homo sapiens chromosome 18 clone RP11-321I20 map 18, LOW-PASS SEQUENCE SAMPLING.    44  1.1  1
AL246648|AL246648.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 030L08 of library G from Tetraodon nigroviridis.    32  1.4  3
AC133734|AC133734.2 Rattus norvegicus clone CH230-467P12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  1.4  2
AA067216|AA067216.1 mm29h12.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone IMAGE:522983 5', mRNA sequence.    38  2.5  2
AX392734|AX392734.1 Sequence 24 from Patent WO0212526.            36  2.7  3
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                 34  3.1  3
AF381714|AF381714.1 Uncultured chlorophyte clone 994FY29 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds.    42  4.2  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34  4.4  4
BI360098|BI360098.1 384967 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence.    38  4.5  2
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K74) RecName: Full=Endoplasmic reticulum transmembrane prote...    95   7e-19
BC079182_1(BC079182|pid:none) Rattus norvegicus B-cell receptor-...    39   0.056
BT080943_1(BT080943|pid:none) Caligus clemensi clone ccle-evs-51...    38   0.095
AE017344_419(AE017344|pid:none) Cryptococcus neoformans var. neo...    38   0.095
DQ525635_1(DQ525635|pid:none) Mesocricetus auratus BAP31 mRNA, c...    38   0.12
BT080295_1(BT080295|pid:none) Caligus clemensi clone ccle-evs-50...    38   0.12
BC072342_1(BC072342|pid:none) Xenopus laevis MGC83239 protein, m...    38   0.12
BT045436_1(BT045436|pid:none) Salmo salar clone ssal-rgf-521-193...    38   0.12
BX072538_6(BX072538|pid:none) Zebrafish DNA sequence from clone ...    38   0.12
BC076818_1(BC076818|pid:none) Xenopus laevis B-cell receptor-ass...    37   0.16
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.15  alm: 0.77  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSG374 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG374Z
3' end seq. 
>SSG374Z.Seq
----------CTTATCGGAAAATGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGA
TGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTA
AACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATG
ATTAATCNTCNTAAAAATAATAATAATAATAATTAATTCATTATTATTATTATTATTATC
ATTATCATCATCAGATTTAAATTTATAAAAAAAAATAAATAAAAAAAAAAAAAACTTATT
ATTATTTTTTTACTAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 326
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -