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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG368
Library SS
(Link to library)
Clone ID SSG368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16115-1
Original site URL
Representative seq. ID SSG368Z
(Link to Original site)
Representative DNA sequence 
>SSG368 (SSG368Q) /CSM/SS/SSG3-C/SSG368Q.Seq.d/
XXXXXXXXXXATGTCAAGAGCATACTTAGCAGATAATGATNAAGGATGGGCAAAAAAGAA
AGGTGCTGATAGCCATGCCACTCCAAGACCACACAAACAAACTAAAATGAATAAATTAAA
AGAAATTGATACTGACCAATTTTTAGTTCCACCAGTCAATGCATTCAAATTGGACCTTGA
TGGCGATATTCGTAGAGGTGGTAATAAAAAAAGTGAAAGAGTCTCTGGTTTCAGTGGTCG
TTAAAAATTATATTTACTGAATAATAAAGTTCATTTATATT
sequence update 1998. 3.21
Translated Amino Acid sequence 
---SRAYLADNDXGWAKKKGADSHATPRPHKQTKMNKLKEIDTDQFLVPPVNAFKLDLDG
DIRRGGNKKSERVSGFSGR*klyllnnkvhly
Translated Amino Acid sequence (All Frames) 
Frame A:
---cqeht*qimxkdgqkrkvliamplqdhtnklk*in*kkliltnf*fhqsmhsnwtlm
aifvevvikkvkeslvsvvvknyiy*iikfiyi


Frame B:
---vksilsr**xrmgkkerc**pchskttqtn*ne*ikrn*y*pifsstsqciqigp*w
rys*rw**kk*kslwfqwslkiifte**ssfi


Frame C:
---SRAYLADNDXGWAKKKGADSHATPRPHKQTKMNKLKEIDTDQFLVPPVNAFKLDLDG
DIRRGGNKKSERVSGFSGR*klyllnnkvhly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM204 (SSM204Q) /CSM/SS/SSM2-A/SSM204Q.Seq.d/                        490   e-138
SSJ627 (SSJ627Q) /CSM/SS/SSJ6-B/SSJ627Q.Seq.d/                        490   e-138
SSG368 (SSG368Q) /CSM/SS/SSG3-C/SSG368Q.Seq.d/                        490   e-138
SSF541 (SSF541Q) /CSM/SS/SSF5-B/SSF541Q.Seq.d/                        490   e-138
SSD812 (SSD812Q) /CSM/SS/SSD8-A/SSD812Q.Seq.d/                        490   e-138
SSA708 (SSA708Q) /CSM/SS/SSA7-A/SSA708Q.Seq.d/                        478   e-134
SSC784 (SSC784Q) /CSM/SS/SSC7-D/SSC784Q.Seq.d/                        466   e-131
FC-BO04 (FC-BO04Q) /CSM/FC/FC-BO/FC-BO04Q.Seq.d/                      450   e-126
SLF413 (SLF413Q) /CSM/SL/SLF4-A/SLF413Q.Seq.d/                        357   6e-98
VSE542 (VSE542Q) /CSM/VS/VSE5-B/VSE542Q.Seq.d/                        242   2e-63
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M63076|M63076.1 R.tsutsugamushi Sta22 protein gene, complete cds.    50  0.014  1
BZ226762|BZ226762.1 CH230-446D18.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-446D18, DNA sequence.    46  0.22  1
AC008500|AC008500.7 Homo sapiens chromosome 5 clone CTC-439D5, complete sequence.    46  0.22  1
AC112997|AC112997.3 Mus musculus clone RP24-484I6, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.22  1
AP001997|AP001997.2 Homo sapiens genomic DNA, chromosome 11q clone:RP11-281D19, WORKING DRAFT SEQUENCE, 15 unordered pieces.    46  0.22  1
AC091907|AC091907.4 Homo sapiens chromosome 5 clone RP11-195C11, complete sequence.    46  0.22  1
AC011023|AC011023.3 Homo sapiens clone RP11-115C16, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46  0.22  1
AC101576|AC101576.1 Mus musculus clone RP23-197E14, LOW-PASS SEQUENCE SAMPLING.    46  0.22  1
AC091824|AC091824.3 Homo sapiens chromosome 5 clone CTC-455O22, complete sequence.    46  0.26  2
AE000790|AE000790.1 Borrelia burgdorferi plasmid lp54, complete plasmid sequence.    48  0.34  2
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016820_329(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    37   0.16
FN392322_763(FN392322|pid:none) Pichia pastoris GS115 chromosome...    35   0.81
CP000497_369(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    35   1.1
AP007150_91(AP007150|pid:none) Aspergillus oryzae RIB40 genomic ...    34   1.4
AM920428_85(AM920428|pid:none) Penicillium chrysogenum Wisconsin...    33   2.4
CR382124_165(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    32   5.2
AF193508_1(AF193508|pid:none) Candida albicans copper resistance...    32   6.8
AF268098_1(AF268098|pid:none) Candida albicans Cu-transporting P...    32   6.8
AM920430_149(AM920430|pid:none) Penicillium chrysogenum Wisconsi...    32   8.9
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSG368 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG368Z
3' end seq. 
>SSG368Z.Seq
----------ATGTCAAGAGCATACTTAGCAGATAATGATNAAGGATGGGCAAAAAAGAA
AGGTGCTGATAGCCATGCCACTCCAAGACCACACAAACAAACTAAAATGAATAAATTAAA
AGAAATTGATACTGACCAATTTTTAGTTCCACCAGTCAATGCATTCAAATTGGACCTTGA
TGGCGATATTCGTAGAGGTGGTAATAAAAAAAGTGAAAGAGTCTCTGGTTTCAGTGGTCG
TTAAAAATTATATTTACTGAATAATAAAGTTCATTTATATT
Length of 3' end seq. 271
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -