>SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/
GTCCACAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACT
ATATGCAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGAT
ATCATTCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATG
ATGCTTTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAG
ATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTT
ATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGTA
CTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACC
AAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAACAACATGTG
ATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTGTT
CAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAACCAATCGATT
TCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAATTAAXXXXX
XXXXXTTTTGGAAATGGCAATTTTATTCATTTCAATTAGATTATTTTAAAATTAGATTAT
TTTAAATTAAATTGGTTTTAAATAAAAACTAAAAACAAAATTAATAAAAAAAAAATATCT
TTTTTTTTTAATTTTTTTCAAACTGTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

PQTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYD
AFFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGT
QLNQYIEWMQQYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCS
TVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEI---

---FWKWQFYSFQLDYFKIRLF*iklvlnkn*kqn**kknifff*ffsncf*kkkkkkkk
kkkkkkkkkkkkkk

Frame A:
vhkhqyhgehsmtmtkskstickhqfskqfleislvswvdiiqqlvsmtlqlv*iiqqnm
mlslk*emvhyqis*msmvkmnfygvmlvsfvlfhtlmkligiktsiqllqkliweqlmv
ln*inisngcnniifqiqytkhgtsgtimvkiclfhqqhvmislnnqsni*vvlvliiiv
qqfsreitlifslknhnqsisqnimmislnsmkly*kl---

---FWKWQFYSFQLDYFKIRLF*iklvlnkn*kqn**kknifff*ffsncf*kkkkkkkk
kkkkkkkkkkkkkk

Frame B:
stntstmgniq*q*rnrsllyastsfrssfwkflw*vgwisfsnwfl*pynwfklysri*
cfl*srkwyitkyhkcrw*r*tfmv*cwyplycsih**nllg*khlfncfknlygnn*wy
siksiyrmdati*yfkssipnmgrleqlwsrfvcsinnm**fhstinrtfr*ywy*l*lf
nsfqerlh*sfh*ktttnrfhrtl**yl*il*scirn*---

---fgngnfihfn*iilkldyfklnwf*iktknkinkkkisfffnffqtvfekkkkkkkk
kkkkkkkkkkkkk

Frame C:
PQTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYD
AFFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGT
QLNQYIEWMQQYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCS
TVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEI---

---lemailfisirlf*n*iiln*igfk*klktklikkkylffliffklflkkkkkkkkk
kkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                       1298   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                       1235   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                       1178   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                       1160   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                       1100   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        860   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        846   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                      846   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                         846   0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                        821   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   821   0.0    6
BX530407|BX530407.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.060  8
AC122888|AC122888.3 Mus musculus chromosome UNK clone RP23-93F11, WORKING DRAFT SEQUENCE, 9 unordered pieces.    46   0.84   1
AC108909|AC108909.14 Mus musculus chromosome 3 clone RP24-245I16 map 3, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46   0.84   1
AX348713|AX348713.1 Sequence 171 from Patent WO0202807.            36   0.90   4
AX346118|AX346118.1 Sequence 1189 from Patent WO0200928.           36   0.90   4
AX344752|AX344752.1 Sequence 177 from Patent WO0200927.            36   0.90   4
AX344302|AX344302.1 Sequence 149 from Patent WO0200926.            36   0.90   4
AL929442|AL929442.9 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-95M20.    44   1.7    3
AL121982|AL121982.19 Human DNA sequence from clone RP5-1185H19 on chromosome 1p13.1-13.3.    44   2.4    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   470   e-131
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   298   1e-79
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...   105   2e-21
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...   105   2e-21
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...   104   4e-21
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...   104   4e-21
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...   102   2e-20
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...   100   6e-20
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    99   1e-19
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    99   1e-19

 psg: 0.87  gvh: 0.41  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSG340 is cyt

>SSG340F.Seq
GTCCACAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACT
ATATGCAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGAT
ATCATTCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATG
ATGCTTTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAG
ATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTT
ATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGTA
CTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACC
AAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAACAACATGTG
ATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTGTT
CAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAACCAATCGATT
TCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAATTAA-----
-----

>SSG340Z.Seq
----------TTTTGGAAATGGCAATTTTATTCATTTCAATTAGATTATTTTAAAATTAG
ATTATTTTAAATTAAATTGGTTTTAAATAAAAACTAAAAACAAAATTAATAAAAAAAAAA
TATCTTTTTTTTTTAATTTTTTTCAAACTGTTTTTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

>SSG340P.Seq
GTCCACAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACT
ATATGCAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGAT
ATCATTCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATG
ATGCTTTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAG
ATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTT
ATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGTA
CTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACC
AAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAACAACATGTG
ATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTGTT
CAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAACCAATCGATT
TCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAATTAA-----
-----TTTTGGAAATGGCAATTTTATTCATTTCAATTAGATTATTTTAAAATTAGATTAT
TTTAAATTAAATTGGTTTTAAATAAAAACTAAAAACAAAATTAATAAAAAAAAAATATCT
TTTTTTTTTAATTTTTTTCAAACTGTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA