SSG339
Library SS
(Link to library)
Clone ID SSG339
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID SSG339F
(Link to Original site)
Representative DNA sequence
>SSG339 (SSG339Q) /CSM/SS/SSG3-B/SSG339Q.Seq.d/
CACAATTATTCATAAATAAAAATGGCATCACAAGAAAGTTTAACTGAAGAACAAATTGCT
GAATTCAAAGAAGCATTCTCTTTATTCGATAAAGATGGTGATGGTTCAATTACCACCAAA
GAATTAGGTACTGTTATGAGATCATTAGGTCAAAACCCAACTGAAGCTGAATTACAAGAT
ATGATCAATGAAGTTGACGCTGATGGTAATGGTAACATTGATTTCCCAGAATTTTTAACC
ATGATGGCTCGTAAAATGCAAGACACTGATACTGAAGAAGAAATCCGTGAAGCATTCAAA
GTTTTCGATAAAGACGGTAACGGTTACATCTCAGCTGCTGAACTTAGACACGTTATGACC
AGTCTTGGTGAAAAACTTACCAACGAAGAAGTTGATGAAATGATTAGAGAAGCTGATTTG
GATGGCGATGGTCAAGTTAACTATGANGAATTTGTTAAAATGATGATTGTTAGAAATTAA
GAAAATTTAATATTAAAAAAAAACAAAAACCTTGAAAAAAAAAAAAAAAAACAAAATAAT
ATATTATAAATAAAAAAACCCATCTATATTAATGTAXXXXXXXXXX
sequence update 1998.10.20
Translated Amino Acid sequence
hnys*IKMASQESLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQD
MINEVDADGNGNIDFPEFLTMMARKMQDTDTEEEIREAFKVFDKDGNGYISAAELRHVMT
SLGEKLTNEEVDEMIREADLDGDGQVNYXEFVKMMIVRN*enlilkknknlekkkkkqnn
il*ikkpiyin---


Translated Amino Acid sequence (All Frames)
Frame A:
hnys*IKMASQESLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQD
MINEVDADGNGNIDFPEFLTMMARKMQDTDTEEEIREAFKVFDKDGNGYISAAELRHVMT
SLGEKLTNEEVDEMIREADLDGDGQVNYXEFVKMMIVRN*enlilkknknlekkkkkqnn
il*ikkpiyin---


Frame B:
tiihk*kwhhkkv*lknkllnskkhslysikmvmvqlppkn*vll*dh*vktqlklnyki
*smkltlmvmvtlisqnf*p*wlvkcktlilkkksvkhskfsiktvtvtsqllnldtl*p
vlvknlptkklmk*lekliwmamvkltmxnllk**lleikki*y*kktktlkkkkknkii
yyk*knpsilm---


Frame C:
qlfinkngitrkfn*rtnc*iqrsilfir*rw*wfnyhqrirycyeiirskpn*s*itry
dq*s*r*w*w*h*fprifnhdgs*narh*y*rrnp*siqsfr*rr*rlhlsc*t*trydq
sw*ktyqrrs**nd*rs*fgwrwss*l*xic*nddc*klrkfnikkkqkp*kkkkktk*y
iinkkthly*c---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG339 (SSG339Q) /CSM/SS/SSG3-B/SSG339Q.Seq.d/ 973 0.0
SSC370 (SSC370Q) /CSM/SS/SSC3-C/SSC370Q.Seq.d/ 967 0.0
SSJ721 (SSJ721Q) /CSM/SS/SSJ7-A/SSJ721Q.Seq.d/ 954 0.0
SSI423 (SSI423Q) /CSM/SS/SSI4-A/SSI423Q.Seq.d/ 954 0.0
VSD124 (VSD124Q) /CSM/VS/VSD1-A/VSD124Q.Seq.d/ 952 0.0
SSF835 (SSF835Q) /CSM/SS/SSF8-B/SSF835Q.Seq.d/ 948 0.0
VSI787 (VSI787Q) /CSM/VS/VSI7-D/VSI787Q.Seq.d/ 936 0.0
SSC609 (SSC609Q) /CSM/SS/SSC6-A/SSC609Q.Seq.d/ 928 0.0
SSL632 (SSL632Q) /CSM/SS/SSL6-B/SSL632Q.Seq.d/ 926 0.0
SSA510 (SSA510Q) /CSM/SS/SSA5-A/SSA510Q.Seq.d/ 926 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M64089|M64089.1 Dictyostelium discoideum calmodulin (calA) gene, complete cds. 478 0.0 5
M13009|M13009.1 D.discoideum calmodulin mRNA, partial cds. 846 0.0 1
D10521|D10521.1 T.pyriformis mRNA for calmodulin. 311 6e-81 1
CB073854|CB073854.1 taa21c03.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar to TR:O96102 O96102 CALMODULIN. ;, mRNA sequence. 206 3e-79 2
CF655196|CF655196.1 tac86c06.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to TR:O96102 O96102 CALMODULIN. ;, mRNA sequence. 206 3e-79 2
BP505806|BP505806.1 Hydra magnipapillata cDNA, clone:hm_03791. 206 3e-79 2
BP519990|BP519990.1 Hydra magnipapillata cDNA, clone:hmp_17304. 206 3e-79 2
BM394651|BM394651.1 50072-2-5-C06.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 303 1e-78 1
X52242|X52242.1 T.thermophila mRNA for calmodulin. 303 1e-78 1
CF778711|CF778711.1 tad17d04.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:CALM_PLECO P11120 CALMODULIN. [1] ;, mRNA sequence. 230 7e-78 4
dna update 2004. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

M13009_1(M13009|pid:none) D.discoideum calmodulin mRNA, partial ... 273 2e-72
DQ457005_1(DQ457005|pid:none) Synthetic construct plasmid pN1-4n... 270 3e-71
AY891413_1(AY891413|pid:none) Synthetic construct Homo sapiens c... 269 5e-71
AY894058_1(AY894058|pid:none) Synthetic construct Homo sapiens c... 269 5e-71
AX441271_1(AX441271|pid:none) Sequence 2 from Patent EP1209167. ... 269 5e-71
(Q95NR9) RecName: Full=Calmodulin; Short=CaM; &AB06318... 268 6e-71
MCSFCU(JK0011)calmodulin - sea cucumber (Stichopus japonicus) 268 1e-70
AK152715_1(AK152715|pid:none) Mus musculus bone marrow macrophag... 268 1e-70
(P21251) RecName: Full=Calmodulin; Short=CaM; 268 1e-70
BC008437_1(BC008437|pid:none) Homo sapiens calmodulin 2 (phospho... 268 1e-70
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.38 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SSG339 is cyt

5' end seq. ID SSG339F
5' end seq.
>SSG339F.Seq
CACAATTATTCATAAATAAAAATGGCATCACAAGAAAGTTTAACTGAAGAACAAATTGCT
GAATTCAAAGAAGCATTCTCTTTATTCGATAAAGATGGTGATGGTTCAATTACCACCAAA
GAATTAGGTACTGTTATGAGATCATTAGGTCAAAACCCAACTGAAGCTGAATTACAAGAT
ATGATCAATGAAGTTGACGCTGATGGTAATGGTAACATTGATTTCCCAGAATTTTTAACC
ATGATGGCTCGTAAAATGCAAGACACTGATACTGAAGAAGAAATCCGTGAAGCATTCAAA
GTTTTCGATAAAGACGGTAACGGTTACATCTCAGCTGCTGAACTTAGACACGTTATGACC
AGTCTTGGTGAAAAACTTACCAACGAAGAAGTTGATGAAATGATTAGAGAAGCTGATTTG
GATGGCGATGGTCAAGTTAACTATGANGAATTTGTTAAAATGATGATTGTTAGAAATTAA
GAAAATTTAATATTAAAAAAAAACAAAAACCTTGAAAAAAAAAAAAAAAAACAAAATAAT
ATATTATAAATAAAAAAACCCATCTATATTAATGTA----------
Length of 5' end seq. 576
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -