SSG327
Library SS
(Link to library)
Clone ID SSG327
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSG327Z
(Link to Original site)
Representative DNA sequence
>SSG327 (SSG327Q) /CSM/SS/SSG3-B/SSG327Q.Seq.d/
XXXXXXXXXXTGATCATTACATTCTTAGTTATGATTTTGGCTCTTACTTGGATATTCAAA
ATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTT
CAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTT
GGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTT
CTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAA
GATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTG
GTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTG
GTGGTCAAACAGGTAATCCAACAAATTAATTAAATAATAATAATA
sequence update 1998. 3.21
Translated Amino Acid sequence
---DHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIW
GIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISG
GDKTNNTLKPKQTTKGFNIGGQTGNPTN*lnnnn


Translated Amino Acid sequence (All Frames)
Frame A:
---DHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIW
GIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISG
GDKTNNTLKPKQTTKGFNIGGQTGNPTN*lnnnn


Frame B:
---iitflvmilaltwifkiqlikiskielnglknqlwlqfvvvnsvqieplksmlnkfg
vlkngrdqvqfqfqmkklvly*fhhhlvhqmismlsqlkdyhl*lllnkllllhyllslv
vikpttl*nqnklqkvlilvvkqviqqin*iiii


Frame C:
---slhs*l*fwlllgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlg
y*rmeetrssssfk*rssffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww
**nqqhfktktnykrf*ywwsnr*snklik***


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG327 (SSG327Q) /CSM/SS/SSG3-B/SSG327Q.Seq.d/ 902 0.0
SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/ 886 0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/ 886 0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/ 886 0.0
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/ 886 0.0
AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/ 886 0.0
AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/ 886 0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/ 882 0.0
AFE476 (AFE476Q) /CSM/AF/AFE4-D/AFE476Q.Seq.d/ 880 0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/ 870 0.0

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 886 0.0 1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 1e-04 11
BX546488|BX546488.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP71-7A17. 40 3e-04 6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.001 9
AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence. 42 0.002 9
AC101183|AC101183.1 Mus musculus clone RP23-176D22, LOW-PASS SEQUENCE SAMPLING. 42 0.004 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 0.004 9
AJ226749|AJ226749.1 Ciona intestinalis genomic fragment, clone 19H7. 52 0.007 1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 34 0.007 7
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 32 0.008 7
dna update 2004. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 81 1e-14
CP001330_331(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 79 6e-14
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 79 6e-14
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos... 79 6e-14
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho... 78 1e-13
CP000382_94(CP000382|pid:none) Clostridium novyi NT, complete ge... 77 1e-13
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c... 76 4e-13
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 76 4e-13
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos... 76 4e-13
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou... 76 4e-13
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.39 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.10 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSG327 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG327Z
3' end seq.
>SSG327Z.Seq
----------TGATCATTACATTCTTAGTTATGATTTTGGCTCTTACTTGGATATTCAAA
ATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTT
CAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTT
GGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTT
CTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAA
GATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTG
GTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTG
GTGGTCAAACAGGTAATCCAACAAATTAATTAAATAATAATAATA
Length of 3' end seq. 455
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -