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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG310
Library SS
(Link to library)
Clone ID SSG310
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SSG310P
(Link to Original site)
Representative DNA sequence 
>SSG310 (SSG310Q) /CSM/SS/SSG3-A/SSG310Q.Seq.d/
AAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTG
CTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGA
CTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCA
ATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTC
TCTCTGCTAAATCCGTTAAACAAATCATTCAAAAAAAAAAAAAAAAAAAAATTCAAAATA
AATTCAGAAAAAAATTAAAAAAAAAAAAAAAAAAAAATTCTGATAGTGTGCGACCACAGA
ATTTTATTTTTAATATTATTTTTATTTTTTTTTTTTATATATTAATTTCTCAAAAATTTA
AAACCAATAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAXXXXXXXXXXCCGTTAAACA
AATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGT
AAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATAT
CTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCA
CGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGT
TGTTGCTAATTAGAGAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAATAAAAAT
AAAAACCATTAAAAATTTGTAAATTAAAAAAAAAAAA
sequence update 1998.10.20
Translated Amino Acid sequence 
MKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVN
QSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKKKKKIQNKFRKKLKKKKKKNSDSVRPQN
FIFNIIFIFFFYILISQKFKTNKKKKKKKKNL---

---VKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNEL
VKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkkkkkkkkiikiikiktiknl*ikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*skrqrd*kdgv*rlthqllphqalphhqslvplrlhq*lqpnnlyhnlhsqlvlpsls
ikviaisqsllpnnslivsfsllnplnksfkkkkkkkfkinsekn*kkkkkkilivcdhr
ilflilflffffiy*flknlkpikkkkkkkki*---

---plnksfkrkplivilsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn
*lktlltkiikslmkfkys*vyyi*llllirekkkkkkkk**k**k*kplkicklkkk

Frame B:
neargkeirkmgfkd*ltncyltkhylttsl*yhsgctsdsnrticttisilnwccrlcq
sks*qspnryyptip*syrslc*ir*tnhskkkkkknsk*iqkkikkkkkkkf**catte
fyf*yyfyffflyinfski*nq*kkkkkkkkfk---

---r*tnhskenl*s*ychlyshgfskgicklwydslfnypnvfrylskcw*trwccq*i
s*rhcsrk**nl**nsstlrfiifsccc*lekkkkkkkknnknnknknh*kfvn*kkk

Frame C:
MKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVN
QSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKKKKKIQNKFRKKLKKKKKKNSDSVRPQN
FIFNIIFIFFFYILISQKFKTNKKKKKKKKNL---

---VKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNEL
VKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkkkkkkkkiikiikiktiknl*ikkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                        535   e-151
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        535   e-151
SSG310 (SSG310Q) /CSM/SS/SSG3-A/SSG310Q.Seq.d/                        535   e-151
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        535   e-151
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        535   e-151
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        535   e-151
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        535   e-151
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                        535   e-151
CFB439 (CFB439Q) /CSM/CF/CFB4-B/CFB439Q.Seq.d/                        535   e-151
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                        535   e-151
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   535   e-148  1
AL355815|AL355815.9 Human DNA sequence from clone RP3-453H5 on chromosome 6. Contains  ESTs, STSs, GSSs and a CpG island. Contains a novel gene.    50   0.050  1
AX344574|AX344574.1 Sequence 25 from Patent WO0200932.             46   0.78   1
AC022920|AC022920.3 Homo sapiens chromosome 5 clone RP11-72L22 map 5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    46   0.78   1
AC008394|AC008394.3 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence.    46   0.78   1
AC109492|AC109492.2 Homo sapiens chromosome 5 clone RP11-72L22, complete sequence.    46   0.78   1
AX348405|AX348405.1 Sequence 100 from Patent WO0202806.            36   1.2    3
AX345843|AX345843.1 Sequence 914 from Patent WO0200928.            36   1.2    3
AX346630|AX346630.1 Sequence 1701 from Patent WO0200928.           36   2.5    2
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   3.1    1
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   142   2e-32
protein update 2009. 1.30
PSORT 

 psg: 0.71  gvh: 0.47  alm: 0.25  top: 0.67  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.91  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG310 is pla
5' end seq. ID SSG310F
5' end seq. 
>SSG310F.Seq
AAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTG
CTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGA
CTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCA
ATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTC
TCTCTGCTAAATCCGTTAAACAAATCATTCAAAAAAAAAAAAAAAAAAAAATTCAAAATA
AATTCAGAAAAAAATTAAAAAAAAAAAAAAAAAAAAATTCTGATAGTGTGCGACCACAGA
ATTTTATTTTTAATATTATTTTTATTTTTTTTTTTTATATATTAATTTCTCAAAAATTTA
AAACCAATAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAA----------
Length of 5' end seq. 460
3' end seq. ID SSG310Z
3' end seq. 
>SSG310Z.Seq
----------CCGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATC
TCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACT
ACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAA
TTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTA
GGTTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAAAAAAAAAAAAAAAAAAAAAA
ATAATAAAAATAATAAAAATAAAAACCATTAAAAATTTGTAAATTAAAAAAAAAAAA
Length of 3' end seq. 347
Connected seq. ID SSG310P
Connected seq. 
>SSG310P.Seq
AAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTG
CTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGA
CTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCA
ATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTC
TCTCTGCTAAATCCGTTAAACAAATCATTCAAAAAAAAAAAAAAAAAAAAATTCAAAATA
AATTCAGAAAAAAATTAAAAAAAAAAAAAAAAAAAAATTCTGATAGTGTGCGACCACAGA
ATTTTATTTTTAATATTATTTTTATTTTTTTTTTTTATATATTAATTTCTCAAAAATTTA
AAACCAATAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAA----------CCGTTAAACA
AATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGT
AAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATAT
CTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCA
CGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGT
TGTTGCTAATTAGAGAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAATAAAAAT
AAAAACCATTAAAAATTTGTAAATTAAAAAAAAAAAA
Length of connected seq. 807
Full length Seq ID -
Full length Seq. -
Length of full length seq. -