>SSG307 (SSG307Q) /CSM/SS/SSG3-A/SSG307Q.Seq.d/
XXXXXXXXXXTACATTCCACCACAAGTTGGCATGCCAGGCTACATTCCACCTCCACCACA
AATGGGTATGCCAGGTTATATTCCACCACCTGTAGGTGTAGTTCCAATGCCACAAATGGG
TATGCCAGGATGTCCACCAATGGTAGTTCCAATGCAACCACTTCCAGGACAATACCCAAT
GGGTGCTCCTTATCCATACAGTGGAGGCTATGGCTATGGTTATCGTGGTCACAAATTTAA
GAAATTTAAAGGTTATAAAGGTTTCAAAAAAGGATACTATCGTTATTAGAATAATTAAAA
CTCTACTTTTTTTGTAAACATATTAATTCCTTTTTTTTTTTTTTTACATTTTCAAAACTT
CAAAACTAAAATAAATTGTAAATTAACTTTATATGACTCTT

---IPPQVGMPGYIPPPPQMGMPGYIPPPVGVVPMPQMGMPGCPPMVVPMQPLPGQYPMG
APYPYSGGYGYGYRGHKFKKFKGYKGFKKGYYRY*nn*nstffvnilipfffflhfqnfk
tkinckltlyds

Frame A:
---tfhhklacqatfhlhhkwvcqvifhhl*v*fqchkwvcqdvhqw*fqcnhfqdntqw
vllihtveamamvivvtnlrnlkvikvskkdtiviriiktllfl*ty*flffffyifkts
klk*ivn*lymtl


Frame B:
---hsttswharlhststtngyarlysttcrcssnatngyarmstngssnattsrtipng
cslsiqwrlwlwlswsqi*ei*rl*rfqkrilslle*lklyffckhinsffffftfsklq
n*nkl*infi*l


Frame C:
---IPPQVGMPGYIPPPPQMGMPGYIPPPVGVVPMPQMGMPGCPPMVVPMQPLPGQYPMG
APYPYSGGYGYGYRGHKFKKFKGYKGFKKGYYRY*nn*nstffvnilipfffflhfqnfk
tkinckltlyds

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK582 (SSK582Q) /CSM/SS/SSK5-D/SSK582Q.Seq.d/                        593   e-169
SSG307 (SSG307Q) /CSM/SS/SSG3-A/SSG307Q.Seq.d/                        593   e-169
SSE772 (SSE772Q) /CSM/SS/SSE7-C/SSE772Q.Seq.d/                        593   e-169
VSB417 (VSB417Q) /CSM/VS/VSB4-A/VSB417Q.Seq.d/                        585   e-166
SSB688 (SSB688Q) /CSM/SS/SSB6-D/SSB688Q.Seq.d/                        573   e-163
SSA178 (SSA178Q) /CSM/SS/SSA1-D/SSA178Q.Seq.d/                        537   e-152
SSC880 (SSC880Q) /CSM/SS/SSC8-D/SSC880Q.Seq.d/                        531   e-150
SSB570 (SSB570Q) /CSM/SS/SSB5-C/SSB570Q.Seq.d/                        521   e-147
SSE156 (SSE156Q) /CSM/SS/SSE1-C/SSE156Q.Seq.d/                        496   e-139
SSM139 (SSM139Q) /CSM/SS/SSM1-B/SSM139Q.Seq.d/                        440   e-123

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC120316|AC120316.4 Rattus norvegicus clone CH230-394G6, WORKING DRAFT SEQUENCE.    48   0.095  1
AC130442|AC130442.3 Rattus norvegicus clone CH230-380O21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    48   0.095  1
BX296535|BX296535.7 Zebrafish DNA sequence from clone CH211-234I2.    34   0.14   4
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5.    32   0.72   2
BX465834|BX465834.12 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-202E12.    36   0.97   7
CF263546|CF263546.1 AUA_IpTrk00012 Trunk kidney cDNA library Ictalurus punctatus cDNA 5' similar to Unknown, mRNA sequence.    36   1.1    2
AC104939|AC104939.7 Homo sapiens chromosome 8, clone CTD-3015B2, complete sequence.    44   1.5    1
AC018864|AC018864.4 Homo sapiens chromosome 8 clone RP11-21C4, WORKING DRAFT SEQUENCE, 37 unordered pieces.    44   1.5    1
AV685037|AV685037.1 Homo sapiens cDNA clone:GKCFOG09, 5'end, expressed in human hepatocellular carcinoma.    44   1.5    1
AF215845|AF215845.3 Homo sapiens chromosome 8 clone CTD-2542N7 map q11-q13, complete sequence.    44   1.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    38   0.12
EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella...    36   0.35
(P40889) RecName: Full=Y' element ATP-dependent helicase YJL225C...    36   0.35
Z48148_1(Z48148|pid:none) S.cerevisiae complete chomosome X left...    36   0.35
(P38900) RecName: Full=Putative uncharacterized protein YHR219W;...    36   0.46
(P38721) RecName: Full=Uncharacterized protein YHL050C;  &S48964...    35   0.79
(Q08995) RecName: Full=Y' element ATP-dependent helicase YPR204W...    33   3.0
(P40105) RecName: Full=Y' element ATP-dependent helicase protein...    33   3.9
AE013599_1969(AE013599|pid:none) Drosophila melanogaster chromos...    33   3.9
Z50178_1(Z50178|pid:none) S.cerevisiae chromosome XIII left telo...    33   3.9

 psg: 0.75  gvh: 0.30  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG307 is nuc

>SSG307Z.Seq
----------TACATTCCACCACAAGTTGGCATGCCAGGCTACATTCCACCTCCACCACA
AATGGGTATGCCAGGTTATATTCCACCACCTGTAGGTGTAGTTCCAATGCCACAAATGGG
TATGCCAGGATGTCCACCAATGGTAGTTCCAATGCAACCACTTCCAGGACAATACCCAAT
GGGTGCTCCTTATCCATACAGTGGAGGCTATGGCTATGGTTATCGTGGTCACAAATTTAA
GAAATTTAAAGGTTATAAAGGTTTCAAAAAAGGATACTATCGTTATTAGAATAATTAAAA
CTCTACTTTTTTTGTAAACATATTAATTCCTTTTTTTTTTTTTTTACATTTTCAAAACTT
CAAAACTAAAATAAATTGTAAATTAACTTTATATGACTCTT