SSG296
Library SS
(Link to library)
Clone ID SSG296
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SSG296Z
(Link to Original site)
Representative DNA sequence
>SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/
XXXXXXXXXXAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAATGCAAACTCT
ATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACTTGTAAAGATA
TGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAGACTGATGAAG
AATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTATTG
CCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCACTG
GTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAA
GTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATG
AATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAATG
GTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAG
AATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATA
ACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTT
AATATTCAAAGACTTTAC
sequence update 1997.11.14
Translated Amino Acid sequence
---GTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLCVLTPQKKTDEE
CCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
DPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklffikk****fnn*slssiitl*yyfnnntff*ysktl


Translated Amino Acid sequence (All Frames)
Frame A:
---GTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTCKDMHCESNGLLCVLTPQKKTDEE
CCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
DPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklffikk****fnn*slssiitl*yyfnnntff*ysktl


Frame B:
---vlarlfnvqkvtnansmlmvqhv*rlknqnvslvkicivsqmdysvs*lhkrrlmkn
vvqlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvwvhlvvdpmknqv
iqmlylvslktifsgvimmntlvittvmlmkkilmkismvmmnlklmlkviskkmiskkn
mhfiklnffs*knnnnnlitnhyhq**hynitlitilffniqrly


Frame C:
---ylqdcsmskrlqmqtlc*wsnmckd*ktkmshl*ryal*vkwitlcldstked**rm
lsnysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwygfiwwsir*rik*
skcytwsl*rryflg****il***lplc**rry**rfqw***i*n*c*r*fprr*frrri
cilln*tffhkkiiiii**liiiinnniiill**qyfflifkdf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 1061 0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 1061 0.0
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/ 1061 0.0
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/ 1061 0.0
SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/ 1061 0.0
SSC195 (SSC195Q) /CSM/SS/SSC1-D/SSC195Q.Seq.d/ 1061 0.0
SLE689 (SLE689Q) /CSM/SL/SLE6-D/SLE689Q.Seq.d/ 1061 0.0
SLE453 (SLE453Q) /CSM/SL/SLE4-C/SLE453Q.Seq.d/ 1061 0.0
SLA864 (SLA864Q) /CSM/SL/SLA8-C/SLA864Q.Seq.d/ 1061 0.0
SLA758 (SLA758Q) /CSM/SL/SLA7-C/SLA758Q.Seq.d/ 1061 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 1061 0.0 1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 1061 0.0 7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 8e-04 11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.022 9
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 50 0.041 1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 50 0.041 1
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence. 50 0.041 1
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complete sequence. 48 0.16 1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2993 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence. 48 0.16 1
CD951782|CD951782.1 SAY_66 GeneTag2 Zea mays cDNA, mRNA sequence. 48 0.16 1
dna update 2004. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 223 5e-57
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 59 1e-07
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 59 1e-07
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 49 1e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 49 1e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 48 3e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 43 0.010
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 37 0.69
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 37 0.69
AY142138_1(AY142138|pid:none) Giardia intestinalis isolate WB cl... 37 0.69
protein update 2009. 6.12
PSORT

psg: 0.63 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 1.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSG296 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG296Z
3' end seq.
>SSG296Z.Seq
----------AGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAATGCAAACTCT
ATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACTTGTAAAGATA
TGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAGACTGATGAAG
AATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTATTG
CCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCACTG
GTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATCAA
GTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGATG
AATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAATG
GTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAG
AATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATA
ACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTT
AATATTCAAAGACTTTAC
Length of 3' end seq. 668
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -