>SSG277 (SSG277Q) /CSM/SS/SSG2-D/SSG277Q.Seq.d/
XXXXXXXXXXCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTG
TTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGA
AGATTATTACATTGTTAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCAT
ATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCT
TAACCTTTTTTATATGTATATATATATATATATATAAATACTCTTCAAACCTGTATAAAT
TTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTCTGTTTATTCTTTTTTAAAAAAA
AAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTCAATTTTC
CTAAATTAAAAAAAAAAAA

---iivsnftlpvftmnqlvllki*imvylllvwvlimvkiitllk*lgtimgfkwlysy
gkk*r*QLWNLNNGFISYCLTFFICIYIYIYKYSSNLYKFVYSLSFFFLFFFCLFFFKKK
KKKKQIIIKII*inflfnfpklkkk

Frame A:
---iivsnftlpvftmnqlvllki*imvylllvwvlimvkiitllk*lgtimgfkwlysy
gkk*r*QLWNLNNGFISYCLTFFICIYIYIYKYSSNLYKFVYSLSFFFLFFFCLFFFKKK
KKKKQIIIKII*inflfnfpklkkk


Frame B:
---**fptlhcrcll*tslff*rfrswctccwygy**w*rllhc*nswgpswglngyihm
arnkdnncgistmasypia*pflyvyiyiyintlqtcinlyilylffffffsvysflkkk
kkknkl*lk*fk*isysifln*kkk


Frame C:
---nsfqlytagvyyepacssedldhgvlavgmgtdngedyyivkivgdhhgv*mvifiw
qeikitivesqqwlhilllnlfymyiyiyi*ilfkpv*iciffifffsffflfilf*kkk
kkktnyn*nnlnkfliqfs*ikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG277 (SSG277Q) /CSM/SS/SSG2-D/SSG277Q.Seq.d/                        476   e-133
SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/                        454   e-127
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        454   e-127
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        454   e-127
SSK227 (SSK227Q) /CSM/SS/SSK2-B/SSK227Q.Seq.d/                        454   e-127
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        454   e-127
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        454   e-127
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        454   e-127
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        454   e-127
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        454   e-127

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM587339|BM587339.1 17000687321079 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone19600449721727 5', mRNA sequence.    40   2e-04  2
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    32   7e-04  13
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   0.001  8
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                  34   0.002  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.003  11
BQ321497|BQ321497.1 RC1-CT0414-310800-013-h04 CT0414 Homo sapiens cDNA, mRNA sequence.    34   0.004  3
BX571693|BX571693.1 Carp DNA sequence from clone carpf-GC2H.       36   0.004  4
BQ321496|BQ321496.1 RC1-CT0414-310800-013-f07 CT0414 Homo sapiens cDNA, mRNA sequence.    34   0.004  3
T27597|T27597.1 EST100806 Human Pancreas Homo sapiens cDNA 5' end similar to cathepsin S (HT:275), mRNA sequence.    34   0.004  3
BX322550|BX322550.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-202N14.    38   0.006  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...    73   1e-24
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...    74   2e-24
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...    65   7e-23
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...    67   2e-22
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...    72   2e-22
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...    66   3e-22
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...    64   6e-22
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50...    69   6e-22
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li...    75   8e-22
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...    67   8e-22

 psg: 0.98  gvh: 0.47  alm: 0.23  top: 0.60  tms: 0.13  mit: 0.39  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG277 is end

>SSG277Z.Seq
----------CATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTG
TTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGA
AGATTATTACATTGTTAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCAT
ATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCT
TAACCTTTTTTATATGTATATATATATATATATATAAATACTCTTCAAACCTGTATAAAT
TTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTCTGTTTATTCTTTTTTAAAAAAA
AAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTCAATTTTC
CTAAATTAAAAAAAAAAAA