SSG275
Library SS
(Link to library)
Clone ID SSG275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01601-1
Original site URL
Representative seq. ID SSG275Z
(Link to Original site)
Representative DNA sequence
>SSG275 (SSG275Q) /CSM/SS/SSG2-D/SSG275Q.Seq.d/
XXXXXXXXXXCATTTATTTAATGCAATCACTTTATTTTTGAAAAGTTTTTATTATTCTCA
TAAACAAAAGAAATTTTTAAAAAATATAAACAATCAATTCTTATTTAGAGATGTTATATT
TTCAACAAAATTAATTGGTGAAAAAGGAAGTGTTCTAAGTGTTGGTTTTTTGGGAAGAAT
TATTTTCTTAATTTTACCATTCTTTATACAATTGAATGTAATCTACGATAAAAATCCATC
TATAAATACCTTTATTGTTGGTTATTTAATCATTGCAATCTTTATTTTAGTTTGGTTTAG
TATTTTAAAAACTTTAGTTATGTTTTCAAAGTATAAATATTTAGTAATTGAACCAAATCA
AACAATAGATTGTAATAAATTATTTTTATTGGAATCACTCGTTATCTCTTATAACTCACC
AATTAATGAAAATTCATTATTTGAACACACTCAAATCACACCAGGAAATATCTTACCATT
TTATCAAGTACCTTTATTACCAAAAGTTTAAACATTAAAAGAGAAAGAAA
sequence update 1997.11.14
Translated Amino Acid sequence
---LFNAITLFLKSFYYSHKQKKFLKNINNQFLFRDVIFSTKLIGEKGSVLSVGFLGRII
FLILPFFIQLNVIYDKNPSINTFIVGYLIIAIFILVWFSILKTLVMFSKYKYLVIEPNQT
IDCNKLFLLESLVISYNSPINENSLFEHTQITPGNILPFYQVPLLPKV*tlkeke


Translated Amino Acid sequence (All Frames)
Frame A:
---iylmqslyf*kvfiilinkrnf*ki*tinsylemlyfqqn*lvkkevf*vlvfweel
fs*fyhslyn*m*stikihl*iplllvi*slqslf*fglvf*kl*lcfqsini**lnqik
q*ivinyfywnhslslithqlmkihylntlkshqeisyhfikylyyqkfkh*krkk


Frame B:
---fi*cnhfifekfllfs*tkeifkkykqsili*rcyifnkinw*krkcskcwffgkny
flnftilytiecnlr*ksiykylycwlfnhcnlyfslv*yfknfsyvfkv*ifsn*tksn
nrl**iifigitryll*ltn**kfii*thsnhtrkyltilsstfitkslnikrer


Frame C:
---LFNAITLFLKSFYYSHKQKKFLKNINNQFLFRDVIFSTKLIGEKGSVLSVGFLGRII
FLILPFFIQLNVIYDKNPSINTFIVGYLIIAIFILVWFSILKTLVMFSKYKYLVIEPNQT
IDCNKLFLLESLVISYNSPINENSLFEHTQITPGNILPFYQVPLLPKV*tlkeke


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK291 (SSK291Q) /CSM/SS/SSK2-D/SSK291Q.Seq.d/ 1031 0.0
SSG275 (SSG275Q) /CSM/SS/SSG2-D/SSG275Q.Seq.d/ 1031 0.0
SSF335 (SSF335Q) /CSM/SS/SSF3-B/SSF335Q.Seq.d/ 1031 0.0
SSI652 (SSI652Q) /CSM/SS/SSI6-C/SSI652Q.Seq.d/ 1029 0.0
SSA460 (SSA460Q) /CSM/SS/SSA4-C/SSA460Q.Seq.d/ 1009 0.0
SSE421 (SSE421Q) /CSM/SS/SSE4-A/SSE421Q.Seq.d/ 993 0.0
SSC579 (SSC579Q) /CSM/SS/SSC5-D/SSC579Q.Seq.d/ 987 0.0
SSD191 (SSD191Q) /CSM/SS/SSD1-D/SSD191Q.Seq.d/ 963 0.0
SSL782 (SSL782Q) /CSM/SS/SSL7-D/SSL782Q.Seq.d/ 831 0.0
SSC620 (SSC620Q) /CSM/SS/SSC6-A/SSC620Q.Seq.d/ 787 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 34 1e-10 19
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 44 2e-10 24
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 8e-10 19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 4e-09 14
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 34 8e-09 17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 2e-08 18
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 34 3e-08 16
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 40 5e-08 28
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 32 7e-08 18
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 36 1e-07 15
dna update 2004. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB029616_9(AB029616|pid:none) Loligo bleekeri mitochondrial DNA,... 34 1.9
CP000300_573(CP000300|pid:none) Methanococcoides burtonii DSM 62... 34 1.9
AE017143_17(AE017143|pid:none) Haemophilus ducreyi strain 35000H... 33 4.3
AY898627_29(AY898627|pid:none) Phytophthora infestans haplotype ... 33 4.3
CP000123_233(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 4.3
DQ832717_23(DQ832717|pid:none) Phytophthora sojae mitochondrion,... 33 4.3
AY894835_22(AY894835|pid:none) Phytophthora infestans haplotype ... 33 4.3
CP000395_267(CP000395|pid:none) Borrelia afzelii PKo, complete g... 32 7.4
CP000382_1214(CP000382|pid:none) Clostridium novyi NT, complete ... 32 7.4
AF160864_35(AF160864|pid:none) Tetrahymena pyriformis mitochondr... 32 9.6
protein update 2009. 1.30
PSORT

psg: 0.63 gvh: 0.41 alm: 0.17 top: 0.53 tms: 0.13 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
20.0 %: plasma membrane
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: nuclear
4.0 %: peroxisomal
4.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for SSG275 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG275Z
3' end seq.
>SSG275Z.Seq
----------CATTTATTTAATGCAATCACTTTATTTTTGAAAAGTTTTTATTATTCTCA
TAAACAAAAGAAATTTTTAAAAAATATAAACAATCAATTCTTATTTAGAGATGTTATATT
TTCAACAAAATTAATTGGTGAAAAAGGAAGTGTTCTAAGTGTTGGTTTTTTGGGAAGAAT
TATTTTCTTAATTTTACCATTCTTTATACAATTGAATGTAATCTACGATAAAAATCCATC
TATAAATACCTTTATTGTTGGTTATTTAATCATTGCAATCTTTATTTTAGTTTGGTTTAG
TATTTTAAAAACTTTAGTTATGTTTTCAAAGTATAAATATTTAGTAATTGAACCAAATCA
AACAATAGATTGTAATAAATTATTTTTATTGGAATCACTCGTTATCTCTTATAACTCACC
AATTAATGAAAATTCATTATTTGAACACACTCAAATCACACCAGGAAATATCTTACCATT
TTATCAAGTACCTTTATTACCAAAAGTTTAAACATTAAAAGAGAAAGAAA
Length of 3' end seq. 520
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -