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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG274
Library SS
(Link to library)
Clone ID SSG274
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11005-1
Original site URL
Representative seq. ID SSG274P
(Link to Original site)
Representative DNA sequence 
>SSG274 (SSG274Q) /CSM/SS/SSG2-D/SSG274Q.Seq.d/
AAATAATAATAATAATAATAATATTGAAAATAATAAAAATAATAAAAATAATAATATTTA
ATAATAAAACTATAATAATAACAAACCAAGGCCAAATATACTATACAATAAAAATTATAA
TAATAAATAATATAATAAAATAATATAATAAATACTAATAATAATTTATTAGATAATAGA
ATAAATAAAAAATAGATATTTAAATATTAAATAAAAAAAAAAATAAAAAAAAAAAATGTA
TTATATAANTNACTCTACTGTTACAACGACACCAGCGCCAACACAAACCCCATACGACTC
GAGAAGGTGTTACTGTGATCCAGTATTTCAATTAGAAGAGGGAGAAGAATGTAACCCTGA
AGGATGTTTAACATTATCAATTATATTTTTXXXXXXXXXXTTAAAATTATCATCAACTGC
AATCGTTATAACAATATTAACAGTTGGTATGGTAATTTGGAGTTTTAAACTTGAAGGTAA
ATTACCAATGTCTCAAATTTTAGCATATAATTTTATTGGTCGTTTCATTGAAATCGTTTG
GATTGGTGTAATGTTATTAGTATTAGCACCAAAATTGCAATCATGGGGTCAAAATTCCTC
TTCAAGAACAAATAGAAACTCTAATCTCGATGATTTAAGTGATTCTTCAATTGACATTGA
ATCAAATGATGATTCTAGTAAAGAAAAAGANTTAACCTCTTGTAATAATAGCTCAAATTT
AAATATTAATACAAATCATAATACTAGTTCAAGTCCAAATGTAAATAATAATTCAAATCA
ATCTTTAGAAGTTTCTGAAAATTTAAATAACAAAGATGATTTAATAGGTGGTGCTGATGT
TTAAATATATAATTTAAATATATTTATTTCTTATTATTATTTTTTTTTTTCTATATATCT
AATCTAAAAAAAAAA
sequence update 1998.10.13
Translated Amino Acid sequence 
nnnnnnniennknnknnni***nynnnkprpnilynknynnk*ynkii**iliiiy*iie
*iknrylnik*kkk*KKKMYYIXXSTVTTTPAPTQTPYDSRRCYCDPVFQLEEGEECNPE
GCLTLSIIF---

---LKLSSTAIVITILTVGMVIWSFKLEGKLPMSQILAYNFIGRFIEIVWIGVMLLVLAP
KLQSWGQNSSSRTNRNSNLDDLSDSSIDIESNDDSSKEKXLTSCNNSSNLNINTNHNTSS
SPNVNNNSNQSLEVSENLNNKDDLIGGADV*iynlnifisyyyfffsiyli*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
k******y*k**k**k**yliikl***qtkakytiq*kl***ii**nniintnnnlldnr
inkk*ifky*ikkkikkknvlyxxlycyndtsantnpirlekvll*ssisirrgrrm*p*
rmfniinyif---

---LKLSSTAIVITILTVGMVIWSFKLEGKLPMSQILAYNFIGRFIEIVWIGVMLLVLAP
KLQSWGQNSSSRTNRNSNLDDLSDSSIDIESNDDSSKEKXLTSCNNSSNLNINTNHNTSS
SPNVNNNSNQSLEVSENLNNKDDLIGGADV*iynlnifisyyyfffsiyli*kk

Frame B:
nnnnnnniennknnknnni***nynnnkprpnilynknynnk*ynkii**iliiiy*iie
*iknrylnik*kkk*KKKMYYIXXSTVTTTPAPTQTPYDSRRCYCDPVFQLEEGEECNPE
GCLTLSIIF---

---*nyhqlqsl*qy*qlvw*fgvlnlkvnyqclkf*hiillvvslksfglv*cy*y*hq
ncnhgvkiplqeqietlismi*vilqltlnqmmilvkkkx*plviiaqi*iliqiiilvq
vqm*iiiqinl*kflki*itkmi**vvlmfkyii*iylfliiiffflyi*skkk

Frame C:
iiiiiiilkiikiikiiifnnktiiitnqgqiyytikiiiinniik*ynky***fir**n
k*kidi*ilnkkknkkkkcii*xtlllqrhqrqhkphttregvtviqyfn*kreknvtlk
dv*hyqlyf---

---kiiincnrynninswygnlef*t*r*itnvsnfsi*fywsfh*nrldwcnvisistk
iaimgskflfknk*kl*sr*fk*ffn*h*ik**f**rkrxnll***lkfky*yks*y*fk
skck**fksifrsf*kfk*qr*fnrwc*clni*fkyiyflllffffyisnlkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG274 (SSG274Q) /CSM/SS/SSG2-D/SSG274Q.Seq.d/                       1197   0.0
SSF157 (SSF157Q) /CSM/SS/SSF1-C/SSF157Q.Seq.d/                        944   0.0
SSJ852 (SSJ852Q) /CSM/SS/SSJ8-C/SSJ852Q.Seq.d/                        876   0.0
SSJ254 (SSJ254Q) /CSM/SS/SSJ2-C/SSJ254Q.Seq.d/                        708   0.0
SSH781 (SSH781Q) /CSM/SS/SSH7-D/SSH781Q.Seq.d/                        640   0.0
AFK124 (AFK124Q) /CSM/AF/AFK1-A/AFK124Q.Seq.d/                        434   e-120
SSH663 (SSH663Q) /CSM/SS/SSH6-C/SSH663Q.Seq.d/                        222   7e-57
SSE473 (SSE473Q) /CSM/SS/SSE4-D/SSE473Q.Seq.d/                         42   0.015
CHI372 (CHI372Q) /CSM/CH/CHI3-C/CHI372Q.Seq.d/                         40   0.058
VHH390 (VHH390Q) /CSM/VH/VHH3-D/VHH390Q.Seq.d/                         38   0.23
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36   5e-07  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-06  22
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   2e-06  13
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    34   4e-06  15
AX392736|AX392736.1 Sequence 26 from Patent WO0212526.             36   7e-06  9
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    32   2e-05  16
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   2e-05  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   3e-05  18
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   3e-05  16
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   9e-05  15
dna update 2004. 2.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 698,050,869
protein update 2009. 6.12
PSORT 

 psg: 0.86  gvh: 0.61  alm: 0.26  top: 0.60  tms: 0.13  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG274 is end
5' end seq. ID SSG274F
5' end seq. 
>SSG274F.Seq
AAATAATAATAATAATAATAATATTGAAAATAATAAAAATAATAAAAATAATAATATTTA
ATAATAAAACTATAATAATAACAAACCAAGGCCAAATATACTATACAATAAAAATTATAA
TAATAAATAATATAATAAAATAATATAATAAATACTAATAATAATTTATTAGATAATAGA
ATAAATAAAAAATAGATATTTAAATATTAAATAAAAAAAAAAATAAAAAAAAAAAATGTA
TTATATAANTNACTCTACTGTTACAACGACACCAGCGCCAACACAAACCCCATACGACTC
GAGAAGGTGTTACTGTGATCCAGTATTTCAATTAGAAGAGGGAGAAGAATGTAACCCTGA
AGGATGTTTAACATTATCAATTATATTTTT----------
Length of 5' end seq. 390
3' end seq. ID SSG274Z
3' end seq. 
>SSG274Z.Seq
----------TTAAAATTATCATCAACTGCAATCGTTATAACAATATTAACAGTTGGTAT
GGTAATTTGGAGTTTTAAACTTGAAGGTAAATTACCAATGTCTCAAATTTTAGCATATAA
TTTTATTGGTCGTTTCATTGAAATCGTTTGGATTGGTGTAATGTTATTAGTATTAGCACC
AAAATTGCAATCATGGGGTCAAAATTCCTCTTCAAGAACAAATAGAAACTCTAATCTCGA
TGATTTAAGTGATTCTTCAATTGACATTGAATCAAATGATGATTCTAGTAAAGAAAAAGA
NTTAACCTCTTGTAATAATAGCTCAAATTTAAATATTAATACAAATCATAATACTAGTTC
AAGTCCAAATGTAAATAATAATTCAAATCAATCTTTAGAAGTTTCTGAAAATTTAAATAA
CAAAGATGATTTAATAGGTGGTGCTGATGTTTAAATATATAATTTAAATATATTTATTTC
TTATTATTATTTTTTTTTTTCTATATATCTAATCTAAAAAAAAAA
Length of 3' end seq. 515
Connected seq. ID SSG274P
Connected seq. 
>SSG274P.Seq
AAATAATAATAATAATAATAATATTGAAAATAATAAAAATAATAAAAATAATAATATTTA
ATAATAAAACTATAATAATAACAAACCAAGGCCAAATATACTATACAATAAAAATTATAA
TAATAAATAATATAATAAAATAATATAATAAATACTAATAATAATTTATTAGATAATAGA
ATAAATAAAAAATAGATATTTAAATATTAAATAAAAAAAAAAATAAAAAAAAAAAATGTA
TTATATAANTNACTCTACTGTTACAACGACACCAGCGCCAACACAAACCCCATACGACTC
GAGAAGGTGTTACTGTGATCCAGTATTTCAATTAGAAGAGGGAGAAGAATGTAACCCTGA
AGGATGTTTAACATTATCAATTATATTTTT----------TTAAAATTATCATCAACTGC
AATCGTTATAACAATATTAACAGTTGGTATGGTAATTTGGAGTTTTAAACTTGAAGGTAA
ATTACCAATGTCTCAAATTTTAGCATATAATTTTATTGGTCGTTTCATTGAAATCGTTTG
GATTGGTGTAATGTTATTAGTATTAGCACCAAAATTGCAATCATGGGGTCAAAATTCCTC
TTCAAGAACAAATAGAAACTCTAATCTCGATGATTTAAGTGATTCTTCAATTGACATTGA
ATCAAATGATGATTCTAGTAAAGAAAAAGANTTAACCTCTTGTAATAATAGCTCAAATTT
AAATATTAATACAAATCATAATACTAGTTCAAGTCCAAATGTAAATAATAATTCAAATCA
ATCTTTAGAAGTTTCTGAAAATTTAAATAACAAAGATGATTTAATAGGTGGTGCTGATGT
TTAAATATATAATTTAAATATATTTATTTCTTATTATTATTTTTTTTTTTCTATATATCT
AATCTAAAAAAAAAA
Length of connected seq. 905
Full length Seq ID -
Full length Seq. -
Length of full length seq. -