>SSG266 (SSG266Q) /CSM/SS/SSG2-C/SSG266Q.Seq.d/
XXXXXXXXXXTTTGGTGATAATGGTGTCAGATGTGTCACTACCCCATGTGCATCAACAGA
TGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATACTCATGCCATATTC
AAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAACAGTTAGATCAGA
TGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAATATCAAATGC
TTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCATTATTAAAATGTCC
AGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTTCTCCAACTTG
CACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGA
TCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGT
TTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAA
AAAAAAAAAAA

---GDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDD
YGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCT
QSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivkkkkk
kk

Frame A:
---lvimvsdvslphvhqqmqfy*isvlnkllviyschiqrtlvnililhg*dlkqldqm
tmv*svkvhsvveklqyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv*llqla
lnlhsvpwvchfvqqviv*inseqlkqmdvqniiviqplfvkhinfffc*fskql*kkkk
kkk


Frame B:
---w**wcqmchypmcinrcsfieypy*tnc**ythaifkerw*if*fcmvri*ns*ir*
lwfnrsryiq*wknynikcfhsftrsnw*m*fiaiikmsrwfdydils**kslfsfsnlh
sifilylgyatlssrlsfrsiqsn*skwmskill*snlcl*ntlisffvnflnnckkkkk
kk


Frame C:
---GDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDD
YGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCT
QSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivkkkkk
kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                        985   0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                        985   0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                        985   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                        985   0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/                        985   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                        985   0.0
SSJ893 (SSJ893Q) /CSM/SS/SSJ8-D/SSJ893Q.Seq.d/                        985   0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/                        985   0.0
SSI834 (SSI834Q) /CSM/SS/SSI8-B/SSI834Q.Seq.d/                        985   0.0
SSI294 (SSI294Q) /CSM/SS/SSI2-D/SSI294Q.Seq.d/                        985   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   948   0.0    10
AC006690|AC006690.3 Caenorhabditis elegans cosmid T24F3, complete sequence.    40   0.003  2
AL109748|AL109748.2 Homo sapiens chromosome 21 PAC RPCIP704M13256Q2.    48   0.13   1
AL050303|AL050303.4 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2.    48   0.13   1
AL162851|AL162851.7 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-186M12.    48   0.13   1
AL163204|AL163204.1 Homo sapiens genomic DNA, chromosome 21q, section 3/105.    48   0.13   1
AC106402|AC106402.4 Rattus norvegicus clone CH230-130H6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   0.20   2
BS000003|BS000003.1 Pan troglodytes chromosome 22 clone:PTB-084L06, map 22, complete sequences.    46   0.52   1
AC119797|AC119797.2 Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence.    46   0.52   1
AC099401|AC099401.2 Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence.    46   0.52   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   345   6e-94
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   214   1e-54
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   145   5e-34
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   2e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.005
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    41   0.018
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   0.34
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   1.3
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t...    34   2.2
AB267385_1(AB267385|pid:none) Nepenthes alata NaTLP1b mRNA for t...    34   2.2

 psg: 0.87  gvh: 0.40  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSG266 is nuc

>SSG266Z.Seq
----------TTTGGTGATAATGGTGTCAGATGTGTCACTACCCCATGTGCATCAACAGA
TGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATACTCATGCCATATTC
AAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAACAGTTAGATCAGA
TGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAATATCAAATGC
TTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCATTATTAAAATGTCC
AGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTTCTCCAACTTG
CACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGA
TCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGT
TTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAA
AAAAAAAAAAA