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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG254
Library SS
(Link to library)
Clone ID SSG254
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13721-1
Original site URL
Representative seq. ID SSG254E
(Link to Original site)
Representative DNA sequence 
>SSG254 (SSG254Q) /CSM/SS/SSG2-C/SSG254Q.Seq.d/
ATCAATTTTAGTATTTATATCATATATTTGTGCAAGTTTTGCAGCAAATAACAGGATTTA
TTTATATTCAATCACAGCTTTGGCAGTTGGATTAGGTTTAACTATTCCATCATTTTTTGC
AGCAACAGGTGCAGTTGTTTTAGGTACTGGTAGAGATAAATCAACTTGGGATGTAGAATT
ATTTAAATCTGATCAAGTTTTAATGGGATGGATGTGGCCAAAAGGTCAAATGGCAATTTT
TGTAGATGAAAGTACAATTATTGGACCAGATTCATTTATTGGTAAATTATCAACAGAAAT
TCTTCAATTATCATATATCAGTTATTATATTTGGGGTTATTTTATGGAGATTTATATTTT
ATATAATTTATGGAGATGTCATTTATCAAAGGACCCACAACAACAAAAGATGATGCCAAT
CTGGGATCAAAGATTAAAAATGTTTATTTGCTCATGGATTTCAACTTACTTTATAGTGTT
TTCTATTAATTTAATATTCCCAGCTGTTAGTCCAAGAGGGTAAAACTTTAAATCTCTATA
ACAATACCTTGGAGGGTTTTGGTTTCGCTGGTTTTGTACGTAGTAGAATTGATAATGCAG
CAAAAGGTTCATTTGGTTCATTCCCTTCTGGTCATATAGCACAACTTCATTTGCAATTGG
TTTATCAAGTTATAAGATTTTACCCGCTTATGGTTTCGTTTCAACAATTGCTGCAATCTT
AATCGCAATTGCTACAATGTATTTACGTTATCATTACTTTGTCGATTTCTTAGCTGCTTT
ACCTGTGACCATCTTTTGTTTATTATATGGTGGTTTCTATACACCTTCCGACTTTAAAAA
TGTTTTTGTAAATTGTTTTTACTCGATAAAATCAATCTTTCAAAATATTTTATCAAAATT
TAATAATAAATAATAAATCTATTTAAAAAATAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4. 7
Translated Amino Acid sequence 
SILVFISYICASFAANNRIYLYSITALAVGLGLTIPSFFAATGAVVLGTGRDKSTWDVEL
FKSDQVLMGWMWPKGQMAIFVDESTIIGPDSFIGKLSTEILQLSYISYYIWGYFMEIYIL
YNLWRCHLSKDPQQQKMMPIWDQRLKMFICSWISTYFIVFSINLIFPAVSPRG*nfksl*
qylggfwfrwfct**n**cskrfiwfipfwsysttsfaiglssykilpaygfvstiaail
iaiatmylryhyfvdflaalpvtifcllyggfytpsdfknvfvncfysiksifqnilskf
nnk**iylknkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
infsiyiiylckfcsk*qdlfifnhsfgswirfnysiifcsnrcscfryw*r*inlgcri
i*i*ssfngmdvakrsngnfcr*kynywtrfiyw*iinrnssiiiyqllylglfygdlyf
i*fmemsfikgptttkddanlgskiknvyllmdfnllysvfy*fnipsc*skrvkl*isi
tipwrvlvslvlyvvelimqqkvhlvhsllvi*hnficnwfikl*dftrlwfrfnnccnl
nrncynvftlsllcrflscftcdhllfiiwwflytfrl*kcfcklflldkinlskyfiki
***iinlfkk*kkkkk


Frame B:
SILVFISYICASFAANNRIYLYSITALAVGLGLTIPSFFAATGAVVLGTGRDKSTWDVEL
FKSDQVLMGWMWPKGQMAIFVDESTIIGPDSFIGKLSTEILQLSYISYYIWGYFMEIYIL
YNLWRCHLSKDPQQQKMMPIWDQRLKMFICSWISTYFIVFSINLIFPAVSPRG*nfksl*
qylggfwfrwfct**n**cskrfiwfipfwsysttsfaiglssykilpaygfvstiaail
iaiatmylryhyfvdflaalpvtifcllyggfytpsdfknvfvncfysiksifqnilskf
nnk**iylknkkkkkk


Frame C:
qf*ylyhifvqvlqqitgfiyiqsqlwqld*v*lfhhflqqqvqlf*vlveinqlgm*ny
lnlikf*wdgcgqkvkwqfl*mkvqlldqihllvnyqqkffnyhisviifgvilwrfify
iiygdviyqrthnnkr*cqsgikd*kclfahgfqltl*cflli*ysqllvqegktlnlyn
ntlegfgfagfvrsridnaakgsfgsfpsghiaqlhlqlvyqvirfyplmvsfqqllqs*
sqllqciyviitlsis*llyl*psfvyymvvsihlptlkmfl*ivftr*nqsfkifyqnl
iinnksi*kikkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG254 (SSG254Q) /CSM/SS/SSG2-C/SSG254Q.Seq.d/                        977   0.0
VHK531 (VHK531Q) /CSM/VH/VHK5-B/VHK531Q.Seq.d/                        622   e-177
SSE344 (SSE344Q) /CSM/SS/SSE3-B/SSE344Q.Seq.d/                         38   0.24
VSG343 (VSG343Q) /CSM/VS/VSG3-B/VSG343Q.Seq.d/                         36   0.95
CHN633 (CHN633Q) /CSM/CH/CHN6-B/CHN633Q.Seq.d/                         36   0.95
CHH415 (CHH415Q) /CSM/CH/CHH4-A/CHH415Q.Seq.d/                         36   0.95
VSH840 (VSH840Q) /CSM/VS/VSH8-B/VSH840Q.Seq.d/                         34   3.7
VSG338 (VSG338Q) /CSM/VS/VSG3-B/VSG338Q.Seq.d/                         34   3.7
VSF851 (VSF851Q) /CSM/VS/VSF8-C/VSF851Q.Seq.d/                         34   3.7
VSE479 (VSE479Q) /CSM/VS/VSE4-D/VSE479Q.Seq.d/                         34   3.7
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB042030|AB042030.1 Homo sapiens genomic DNA, chromosome 6q21, BAC clone:610J6.    46  0.52  4
AC130895|AC130895.2 Homo sapiens 12 BAC RP11-115H15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.61  2
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    32  0.80  10
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    34  1.8  9
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  1.9  6
AP002333|AP002333.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2227K3, WORKING DRAFT SEQUENCE, unordered pieces.    44  3.2  1
AC019249|AC019249.4 Homo sapiens clone RP11-115M5, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44  3.2  1
BX539349|BX539349.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  3.2  1
AC068398|AC068398.3 Homo sapiens chromosome 2 clone RP11-73N12 map 2, WORKING DRAFT SEQUENCE, 35 unordered pieces.    44  3.2  1
BX005258|BX005258.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  3.2  1
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001176_1853(CP001176|pid:none) Bacillus cereus B4264, complete...    39   0.26
CP000001_1779(CP000001|pid:none) Bacillus cereus E33L, complete ...    39   0.26
AE017194_2053(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    39   0.26
CP000227_1869(CP000227|pid:none) Bacillus cereus Q1, complete ge...    38   0.45
CP000853_2167(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    37   0.99
CP000993_240(CP000993|pid:none) Borrelia recurrentis A1, complet...    36   2.2
CP000976_249(CP000976|pid:none) Borrelia duttonii Ly, complete g...    36   2.2
CP000271_2150(CP000271|pid:none) Burkholderia xenovorans LB400 c...    35   3.8
CP000133_3352(CP000133|pid:none) Rhizobium etli CFN 42, complete...    35   3.8
AF003384_4(AF003384|pid:none) Caenorhabditis elegans cosmid K07B...    35   4.9
protein update 2009. 3. 6
PSORT 

 psg: 0.94  gvh: 0.69  alm: 0.31  top: 0.53  tms: 0.13  mit: 0.32  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG254 is mit
5' end seq. ID SSG254F
5' end seq. 
>SSG254F.Seq
ATCAATTTTAGTATTTATATCATATATTTGTGCAAGTTTTGCAGCAAATAACAGGATTTA
TTTATATTCAATCACAGCTTTGGCAGTTGGATTAGGTTTAACTATTCCATCATTTTTTGC
AGCAACAGGTGCAGTTGTTTTAGGTACTGGTAGAGATAAATCAACTTGGGATGTAGAATT
ATTTAAATCTGATCAAGTTTTAATGGGATGGATGTGGCCAAAAGGTCAAATGGCAATTTT
TGTAGATGAAAGTACAATTATTGGACCAGATTCATTTATTGGTAAATTATCAACAGAAAT
TCTTCAATTATCATATATCAGTTATTATATTTGGGGTTATTTTATGGAGATTTATATTTT
ATATAATTTATGGAGATGTCATTTATCAAAGGACCCACAACAACAAAAGATGATGCCAAT
CTGGGATCAAAGATTAAAAATGTTTATTTGCTCATGGATTTCAACTTACTTTATAGTGTT
TTCTATTAATTTAATATTCCCAGCTGTTAGTCCAAGAGTTTATATTGGTAAAACTTTAAA
TCTCTATAACAATACCTTGGAGGGTTTTGGTTTCGCTGGTTTTGTACGTAGTAGAATTGA
TAATGCAGCAAAAGGTTCATTTGGTTCATTCCCTTCTGGTCATATAGCA----------
Length of 5' end seq. 649
3' end seq. ID SSG254Z
3' end seq. 
>SSG254Z.Seq
----------GGTAAAACTTTAAATCTCTATAACAATACCTTGGAGGGTTTTGGTTTCGC
TGGTTTTGTACGTAGTAGAATTGATAATGCAGCAAAAGGTTCATTTGGTTCATTCCCTTC
TGGTCATATAGCAACTTCATTTGCAATTGGTTTATCAAGTTATAAGATTTTACCCGCTTA
TGGTTTCGTTTCAACAATTGCTGCAATCTTAATCGCAATTGCTACAATGTATTTACGTTA
TCATTACTTTGTCGATTTCTTAGCTGCTTTACCTGTGACCATCTTTTGTTTATTATATGG
TGGTTTCTATACACCTTCCGACTTTAAAAATGTTTTTGTAAATTGTTTTTACTCGATAAA
ATCAATCTTTCAAAATATTTTATCAAAATTTAATAATAAATAATAAATCTATTTAAAAAA
TAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 437
Connected seq. ID SSG254P
Connected seq. 
>SSG254P.Seq
ATCAATTTTAGTATTTATATCATATATTTGTGCAAGTTTTGCAGCAAATAACAGGATTTA
TTTATATTCAATCACAGCTTTGGCAGTTGGATTAGGTTTAACTATTCCATCATTTTTTGC
AGCAACAGGTGCAGTTGTTTTAGGTACTGGTAGAGATAAATCAACTTGGGATGTAGAATT
ATTTAAATCTGATCAAGTTTTAATGGGATGGATGTGGCCAAAAGGTCAAATGGCAATTTT
TGTAGATGAAAGTACAATTATTGGACCAGATTCATTTATTGGTAAATTATCAACAGAAAT
TCTTCAATTATCATATATCAGTTATTATATTTGGGGTTATTTTATGGAGATTTATATTTT
ATATAATTTATGGAGATGTCATTTATCAAAGGACCCACAACAACAAAAGATGATGCCAAT
CTGGGATCAAAGATTAAAAATGTTTATTTGCTCATGGATTTCAACTTACTTTATAGTGTT
TTCTATTAATTTAATATTCCCAGCTGTTAGTCCAAGAGTTTATATTGGTAAAACTTTAAA
TCTCTATAACAATACCTTGGAGGGTTTTGGTTTCGCTGGTTTTGTACGTAGTAGAATTGA
TAATGCAGCAAAAGGTTCATTTGGTTCATTCCCTTCTGGTCATATAGCA----------G
GTAAAACTTTAAATCTCTATAACAATACCTTGGAGGGTTTTGGTTTCGCTGGTTTTGTAC
GTAGTAGAATTGATAATGCAGCAAAAGGTTCATTTGGTTCATTCCCTTCTGGTCATATAG
CAACTTCATTTGCAATTGGTTTATCAAGTTATAAGATTTTACCCGCTTATGGTTTCGTTT
CAACAATTGCTGCAATCTTAATCGCAATTGCTACAATGTATTTACGTTATCATTACTTTG
TCGATTTCTTAGCTGCTTTACCTGTGACCATCTTTTGTTTATTATATGGTGGTTTCTATA
CACCTTCCGACTTTAAAAATGTTTTTGTAAATTGTTTTTACTCGATAAAATCAATCTTTC
AAAATATTTTATCAAAATTTAATAATAAATAATAAATCTATTTAAAAAATAAAAAAAAAA
AAAAAAAAAAAAAAAA
Length of connected seq. 1086
Full length Seq ID SSG254E
Full length Seq. 
>SSG254E.Seq
ATCAATTTTAGTATTTATATCATATATTTGTGCAAGTTTTGCAGCAAATAACAGGATTTA
TTTATATTCAATCACAGCTTTGGCAGTTGGATTAGGTTTAACTATTCCATCATTTTTTGC
AGCAACAGGTGCAGTTGTTTTAGGTACTGGTAGAGATAAATCAACTTGGGATGTAGAATT
ATTTAAATCTGATCAAGTTTTAATGGGATGGATGTGGCCAAAAGGTCAAATGGCAATTTT
TGTAGATGAAAGTACAATTATTGGACCAGATTCATTTATTGGTAAATTATCAACAGAAAT
TCTTCAATTATCATATATCAGTTATTATATTTGGGGTTATTTTATGGAGATTTATATTTT
ATATAATTTATGGAGATGTCATTTATCAAAGGACCCACAACAACAAAAGATGATGCCAAT
CTGGGATCAAAGATTAAAAATGTTTATTTGCTCATGGATTTCAACTTACTTTATAGTGTT
TTCTATTAATTTAATATTCCCAGCTGTTAGTCCAAGAGGGTAAAACTTTAAATCTCTATA
ACAATACCTTGGAGGGTTTTGGTTTCGCTGGTTTTGTACGTAGTAGAATTGATAATGCAG
CAAAAGGTTCATTTGGTTCATTCCCTTCTGGTCATATAGCACAACTTCATTTGCAATTGG
TTTATCAAGTTATAAGATTTTACCCGCTTATGGTTTCGTTTCAACAATTGCTGCAATCTT
AATCGCAATTGCTACAATGTATTTACGTTATCATTACTTTGTCGATTTCTTAGCTGCTTT
ACCTGTGACCATCTTTTGTTTATTATATGGTGGTTTCTATACACCTTCCGACTTTAAAAA
TGTTTTTGTAAATTGTTTTTACTCGATAAAATCAATCTTTCAAAATATTTTATCAAAATT
TAATAATAAATAATAAATCTATTTAAAAAATAAAAAAAAAAAAAAAAAAA
Length of full length seq. 950