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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG252
Library SS
(Link to library)
Clone ID SSG252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01680-1|Contig-U01743-1
Original site URL
Representative seq. ID SSG252P
(Link to Original site)
Representative DNA sequence 
>SSG252 (SSG252Q) /CSM/SS/SSG2-C/SSG252Q.Seq.d/
AAAAAATTAATAATAGTTCTTAAATAGTTTTTAAAATATTAATACAAATATTAAATAAAT
AGAAAAAAAAAAAAACCATCTTTATATATAAATATTTTTTTTTTAAAAAATAAAAAATAA
AAATAAAATAAAAATATAAATTATTATTAATTAAAGAAATATAAAAATGATCAAAATAAA
TAAACCTAGTTTTTTAATTATTTTTTTAATAGTATTTTCAATTATAAATTTTAAAGATAT
AGTAGTAAAAGCAGATGATACAACAACACCAGCACCAACAACAACAACAACACAACCAAC
ATCAACACCAACTCAAAATTTAACAGTAAAATATAGTTTTGAAATTTCACAATTAAGTCA
AGATGATAAATATTATAATGCAACATTACAAGGATGGATAGATAGTGATGGTAATATATT
TCATTATTCAAGTTGTATAGATAATGTTGAAAAGAAATGCCCAATGGCATCATACAGAGA
TAACATTTCAAGAATTCATTATGTTGAATATTGTGTTCCAATTGATTATGATTGTTGTGG
TTGTAACACTGTTGGTCAACCAGTTTATATTAAAGGTGAAAAGAATACAGTTCTTACAAA
AGTTGGAAGTTGTTTTGGTTGTCCTTCAGATTCAGTATGTACXXXXXXXXXXTTTTAATA
TATATATATATATTTAACCCAAAAAAAAAAAAAAAAAAAAAATTAATAATAATAATAATT
AAAAATTAAAAAAATTAAAAATAAATAAAAAATATATTAATTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.10. 9
Translated Amino Acid sequence 
kn***flnsf*nintnik*iekkknhlyi*ifff*kiknknkiki*iiin*RNIKMIKIN
KPSFLIIFLIVFSIINFKDIVVKADDTTTPAPTTTTTQPTSTPTQNLTVKYSFEISQLSQ
DDKYYNATLQGWIDSDGNIFHYSSCIDNVEKKCPMASYRDNISRIHYVEYCVPIDYDCCG
CNTVGQPVYIKGEKNTVLTKVGSCFGCPSDSVC---

---LIYIYIFNPKKKKKKKLIIIIIKN*kn*k*iknili*kkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkliivlk*flky*yky*inrkkkkpslyinifflknkk*k*nkninyy*lkkykndqnk
*t*ffnyffnsifnykf*ryssksr*ynntstnnnnnttnintnskfnski*f*nftiks
r**il*cnitrmdr**w*yislfklyr*c*kempngiiqr*hfknslc*ilcsn*l*llw
l*hcwstsly*r*keyssykswklfwlsfrfsmy---

---f*yiyiyltqkkkkkkn*****lkikkiknk*kiy*fkkkkkkkkkkkkkkkkk

Frame B:
kn***flnsf*nintnik*iekkknhlyi*ifff*kiknknkiki*iiin*RNIKMIKIN
KPSFLIIFLIVFSIINFKDIVVKADDTTTPAPTTTTTQPTSTPTQNLTVKYSFEISQLSQ
DDKYYNATLQGWIDSDGNIFHYSSCIDNVEKKCPMASYRDNISRIHYVEYCVPIDYDCCG
CNTVGQPVYIKGEKNTVLTKVGSCFGCPSDSVC---

---fniyiyi*pkkkkkkkinnnnn*klkklkinkkyinlkkkkkkkkkkkkkkkkk

Frame C:
kinnss*ivfkiliqilnk*kkkktifiykyfffkk*kikik*kyklllikei*k*sk*i
nlvf*lff**yfql*ilki***kqmiqqhqhqqqqqhnqhqhqlki*q*nivlkfhn*vk
miniimqhykdg*ivmviyfiiqvv*imlkrnaqwhhteitfqefimlnivfqlimivvv
vtllvnqfilkvkriqflqklevvlvvlqiqyv---

---LIYIYIFNPKKKKKKKLIIIIIKN*kn*k*iknili*kkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL146 (SSL146Q) /CSM/SS/SSL1-B/SSL146Q.Seq.d/                        654   0.0
SSK336 (SSK336Q) /CSM/SS/SSK3-B/SSK336Q.Seq.d/                        654   0.0
SSG252 (SSG252Q) /CSM/SS/SSG2-C/SSG252Q.Seq.d/                        654   0.0
SSI701 (SSI701Q) /CSM/SS/SSI7-A/SSI701Q.Seq.d/                        650   0.0
SSH317 (SSH317Q) /CSM/SS/SSH3-A/SSH317Q.Seq.d/                        601   e-171
SSD281 (SSD281Q) /CSM/SS/SSD2-D/SSD281Q.Seq.d/                        500   e-140
SSE387 (SSE387Q) /CSM/SS/SSE3-D/SSE387Q.Seq.d/                        426   e-118
SSG831 (SSG831Q) /CSM/SS/SSG8-B/SSG831Q.Seq.d/                         96   1e-18
FC-IC1348 (FC-IC1348Q) /CSM/FC-IC/FC-IC1348Q.Seq.d/                    42   0.013
VHN186 (VHN186Q) /CSM/VH/VHN1-D/VHN186Q.Seq.d/                         40   0.052
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC106665|AC106665.4 Rattus norvegicus clone CH230-102I13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   0.016  3
BX470149|BX470149.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.18   4
AC141796|AC141796.1 Apis mellifera clone CH224-61C24, *** SEQUENCING IN PROGRESS ***, 62 unordered pieces.    48   0.20   1
AC145959|AC145959.2 Gallus gallus chromosome UNK clone CH261-17M10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.20   1
AU086797|AU086797.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn3421.    36   0.33   2
AC132779|AC132779.4 Rattus norvegicus clone CH230-390J19, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.39   7
AC118089|AC118089.7 Rattus norvegicus clone CH230-390M17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   0.48   7
AC141764|AC141764.1 Apis mellifera clone CH224-60D8, WORKING DRAFT SEQUENCE, 10 unordered pieces.    34   0.66   6
BZ799238|BZ799238.1 PUFJQ20TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa358D15, DNA sequence.    34   0.73   3
AL396791|AL396791.1 T3 end of clone AR0AA032F10 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    46   0.78   1
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM995164_1(FM995164|pid:none) Nakaseomyces delphensis complete m...    39   0.20
AL844509_46(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    36   1.3
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.7
AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.7
AL844503_189(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.9
CR388080_1(CR388080|pid:none) Zebrafish DNA sequence from clone ...    34   4.9
protein update 2009. 6.12
PSORT 

 psg: 1.01  gvh: 0.45  alm: 0.23  top: 0.13  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSG252 is end
5' end seq. ID SSG252F
5' end seq. 
>SSG252F.Seq
AAAAAATTAATAATAGTTCTTAAATAGTTTTTAAAATATTAATACAAATATTAAATAAAT
AGAAAAAAAAAAAAACCATCTTTATATATAAATATTTTTTTTTTAAAAAATAAAAAATAA
AAATAAAATAAAAATATAAATTATTATTAATTAAAGAAATATAAAAATGATCAAAATAAA
TAAACCTAGTTTTTTAATTATTTTTTTAATAGTATTTTCAATTATAAATTTTAAAGATAT
AGTAGTAAAAGCAGATGATACAACAACACCAGCACCAACAACAACAACAACACAACCAAC
ATCAACACCAACTCAAAATTTAACAGTAAAATATAGTTTTGAAATTTCACAATTAAGTCA
AGATGATAAATATTATAATGCAACATTACAAGGATGGATAGATAGTGATGGTAATATATT
TCATTATTCAAGTTGTATAGATAATGTTGAAAAGAAATGCCCAATGGCATCATACAGAGA
TAACATTTCAAGAATTCATTATGTTGAATATTGTGTTCCAATTGATTATGATTGTTGTGG
TTGTAACACTGTTGGTCAACCAGTTTATATTAAAGGTGAAAAGAATACAGTTCTTACAAA
AGTTGGAAGTTGTTTTGGTTGTCCTTCAGATTCAGTATGTAC----------
Length of 5' end seq. 642
3' end seq. ID SSG252Z
3' end seq. 
>SSG252Z.Seq
----------TTTTAATATATATATATATATTTAACCCAAAAAAAAAAAAAAAAAAAAAA
TTAATAATAATAATAATTAAAAATTAAAAAAATTAAAAATAAATAAAAAATATATTAATT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 164
Connected seq. ID SSG252P
Connected seq. 
>SSG252P.Seq
AAAAAATTAATAATAGTTCTTAAATAGTTTTTAAAATATTAATACAAATATTAAATAAAT
AGAAAAAAAAAAAAACCATCTTTATATATAAATATTTTTTTTTTAAAAAATAAAAAATAA
AAATAAAATAAAAATATAAATTATTATTAATTAAAGAAATATAAAAATGATCAAAATAAA
TAAACCTAGTTTTTTAATTATTTTTTTAATAGTATTTTCAATTATAAATTTTAAAGATAT
AGTAGTAAAAGCAGATGATACAACAACACCAGCACCAACAACAACAACAACACAACCAAC
ATCAACACCAACTCAAAATTTAACAGTAAAATATAGTTTTGAAATTTCACAATTAAGTCA
AGATGATAAATATTATAATGCAACATTACAAGGATGGATAGATAGTGATGGTAATATATT
TCATTATTCAAGTTGTATAGATAATGTTGAAAAGAAATGCCCAATGGCATCATACAGAGA
TAACATTTCAAGAATTCATTATGTTGAATATTGTGTTCCAATTGATTATGATTGTTGTGG
TTGTAACACTGTTGGTCAACCAGTTTATATTAAAGGTGAAAAGAATACAGTTCTTACAAA
AGTTGGAAGTTGTTTTGGTTGTCCTTCAGATTCAGTATGTAC----------TTTTAATA
TATATATATATATTTAACCCAAAAAAAAAAAAAAAAAAAAAATTAATAATAATAATAATT
AAAAATTAAAAAAATTAAAAATAAATAAAAAATATATTAATTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -