>SSG238 (SSG238Q) /CSM/SS/SSG2-B/SSG238Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTAATAATGAAAACTATAAATTT
TAAATATTTAAAATTTTAATGAGAAGTAACTTTTGAATATCTTTTAGTGGTAGCAGACGA
ATAACTATCCTGAGAACGAACTTTAGCTGGTGGTCTACCATCGATTGGGACATAGTTTCT
AAACCATTCACCTTTGTAAACTTGACGTGGACGATAGATTTTAGTTTCTGGATCTTCTAA
ATGTTCTACCCAATGAGCTAACCAACCAACGGCACGTGGAATAGTGAATAAAACTGGGAA
CATATCAGTTGGGAAACCCATTGCTTTATAGATGAGACCAGAGTAGAAATCAACATTTGG
ATAAAGTTTTCTGCTTACAAAGTATTCATCTTCCAAGGCTTGTTTCTCCAACTCAGTGGC
TACTTCAATCAATGGTTCTTTACCTAAACTTTCGAAAACTTCATAAGCTACTCTACGAAT
GATCTTGGCTCTTGGATCATAGTTTTTGTAGATTCTATGACCGAAACCCATTAATTTCTT
CTTTTTGCTCTTTACATCTGAAATGAATTGTGGAATATTCTCTTTGGAACCGATATGAAT
TAACATATCCAATACGGCCTCATTGGCACCACCATGAGATGGACCATATAATGCACCAGC
GXXXXXXXXXX

fffffffffff*fnnenykf*ifkilmrsnf*isfsgsrritilrtnfswwstidwdivs
kpftfvnltwtidfsfwif*mfypms*ptngtwnse*NWEHISWETHCFIDETRVEINIW
IKFSAYKVFIFQGLFLQLSGYFNQWFFT*tfenfisystndlgswiivfvdsmteth*fl
lfalyi*nelwnilfgtdmn*hiqygligttmrwti*cts---

Frame A:
fffffffffff*fnnenykf*ifkilmrsnf*isfsgsrritilrtnfswwstidwdivs
kpftfvnltwtidfsfwif*mfypms*ptngtwnse*NWEHISWETHCFIDETRVEINIW
IKFSAYKVFIFQGLFLQLSGYFNQWFFT*tfenfisystndlgswiivfvdsmteth*fl
lfalyi*nelwnilfgtdmn*hiqygligttmrwti*cts---


Frame B:
fffffffffffnlimktinfkylkf**evtfeyllvvade*ls*ertlagglpsigt*fl
nhspl*t*rgr*ilvsgsskcstq*anqptargivnktgnisvgkpial*mrpe*kstfg
*sflltkyssskacfsnsvatsingslpklskts*atlrmilalgs*fl*il*pkpinff
fllftsemncgifslepi*inisntaslapp*dgpynap---


Frame C:
ffffffffffli***kl*ilni*nfnek*llnif*w*qtnnypenel*lvvyhrlghsf*
tihlckldvddrf*fldllnvlpneltnqrhve**iklgtyqlgnpllyr*dqsrnqhld
kvfclqsihlprlvsptqwllqsmvlylnfrklhkllye*swlldhsfcrfydrnpliss
fcslhlk*iveyslwnryeltypirphwhhhemdhimhq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG238 (SSG238Q) /CSM/SS/SSG2-B/SSG238Q.Seq.d/                       1243   0.0
SSF821 (SSF821Q) /CSM/SS/SSF8-A/SSF821Q.Seq.d/                       1243   0.0
SSK530 (SSK530Q) /CSM/SS/SSK5-B/SSK530Q.Seq.d/                       1235   0.0
AFM803 (AFM803Q) /CSM/AF/AFM8-A/AFM803Q.Seq.d/                       1207   0.0
AFI655 (AFI655Q) /CSM/AF/AFI6-C/AFI655Q.Seq.d/                       1193   0.0
AFC579 (AFC579Q) /CSM/AF/AFC5-D/AFC579Q.Seq.d/                       1166   0.0
SSL893 (SSL893Q) /CSM/SS/SSL8-D/SSL893Q.Seq.d/                       1158   0.0
SFE393 (SFE393Q) /CSM/SF/SFE3-D/SFE393Q.Seq.d/                       1148   0.0
AFJ471 (AFJ471Q) /CSM/AF/AFJ4-C/AFJ471Q.Seq.d/                       1128   0.0
SSG330 (SSG330Q) /CSM/SS/SSG3-B/SSG330Q.Seq.d/                       1122   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY124377|AY124377.1 Dictyostelium discoideum citrate synthase (cshA) mRNA, complete cds.  1243   0.0    1
AB109907|AB109907.1 Tetrahymena thermophila tgCS mRNA for putative citrate synthase, complete cds.   101   7e-31  5
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    76   1e-25  5
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene.    76   2e-21  2
AL385088|AL385088.1 Medicago truncatula EST MtBC26C06F1 : T3 end of clone MtBC26C06 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).   103   2e-21  2
BU044708|BU044708.1 PP_LEa0020E04f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0020E04f, mRNA sequence.    62   2e-10  2
BU040616|BU040616.1 PP_LEa0006L02f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0006L02f, mRNA sequence.    62   2e-10  2
AI895330|AI895330.1 EST264773 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC7M24, mRNA sequence.    46   4e-10  3
BE437000|BE437000.1 EST408118 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG35K15, mRNA sequence.    46   7e-10  3
BE436330|BE436330.1 EST407408 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG32C19, mRNA sequence.    46   9e-10  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB109907_1(AB109907|pid:none) Tetrahymena thermophila tgCS mRNA ...   265   9e-70
AK120755_1(AK120755|pid:none) Oryza sativa Japonica Group cDNA c...   263   3e-69
AF310892_1(AF310892|pid:none) Dictyostelium discoideum citrate s...   259   4e-68
(P49299) RecName: Full=Citrate synthase, glyoxysomal;          E...   255   7e-67
AB167269_1(AB167269|pid:none) Chlorobium limicola cit gene for c...   250   2e-65
CP001099_363(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...   250   2e-65
CR954217_232(CR954217|pid:none) Ostreococcus tauri strain OTTH05...   250   3e-65
AB334779_1(AB334779|pid:none) Glycine max mRNA for peroxisomal c...   248   1e-64
CP000096_332(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...   248   1e-64
CP000607_394(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...   247   2e-64

 psg: 0.75  gvh: 0.51  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG238 is cyt

>SSG238F.Seq
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTAATAATGAAAACTATAAATTT
TAAATATTTAAAATTTTAATGAGAAGTAACTTTTGAATATCTTTTAGTGGTAGCAGACGA
ATAACTATCCTGAGAACGAACTTTAGCTGGTGGTCTACCATCGATTGGGACATAGTTTCT
AAACCATTCACCTTTGTAAACTTGACGTGGACGATAGATTTTAGTTTCTGGATCTTCTAA
ATGTTCTACCCAATGAGCTAACCAACCAACGGCACGTGGAATAGTGAATAAAACTGGGAA
CATATCAGTTGGGAAACCCATTGCTTTATAGATGAGACCAGAGTAGAAATCAACATTTGG
ATAAAGTTTTCTGCTTACAAAGTATTCATCTTCCAAGGCTTGTTTCTCCAACTCAGTGGC
TACTTCAATCAATGGTTCTTTACCTAAACTTTCGAAAACTTCATAAGCTACTCTACGAAT
GATCTTGGCTCTTGGATCATAGTTTTTGTAGATTCTATGACCGAAACCCATTAATTTCTT
CTTTTTGCTCTTTACATCTGAAATGAATTGTGGAATATTCTCTTTGGAACCGATATGAAT
TAACATATCCAATACGGCCTCATTGGCACCACCATGAGATGGACCATATAATGCACCAGC
G----------