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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG229
Library SS
(Link to library)
Clone ID SSG229
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04201-1
Original site URL
Representative seq. ID SSG229E
(Link to Original site)
Representative DNA sequence 
>SSG229 (SSG229Q) /CSM/SS/SSG2-B/SSG229Q.Seq.d/
ATGAATTAAATTGTTCAACAGCAACAATGAGACAAATTGCATCAACATTGGTTGACCCAT
ATACAGCATGTGCAGGTAGTGCAGGTGCATTGTATGGTCCATTACATGGTGGTGNCAATG
AAGCAGTGTTAAGAATGTTGGAGGCAATTGGAACCATTGAAAATATTCCAAAGTTTATTG
AACAAGTTAAACAAAAGAAACAACGTTTAATGGGTTTTGGACATCGTGTTTACAAATCAT
ATGATCCACGTGCTAAAATACTTAAAACCGTAACAATGGAGATCTTTGCACTATTGGGTA
AGAATCCATTGATGCAAATCGCAACAGAATTGGAAAGATTGGCACTCTCTGACAGCTATT
TCATAGAGAGACAACTCTATCCAAATGTTGATTTCTACTCTGGTATCATTTACAAGAGTA
TGGGTTTCCCAACTGATATGTTTCCAGTGTTATTCTCAATTCCAAGAGCTGCTGGTTGGT
TGGCTCATTGGGTTGAAGAATTGGCTGATCCAGAACTTCGTATCTTTAGACCACGTCAAA
TCTATATGGGTCGTAGAAATATGAATTATGTTCCAATGGATGCTCGTCAAGTTCAACAAC
ATAATAGTGGTGAGAAATTATCCTCATTCTCTTCTGGTTTCGATCGTCGTAGAGATGTCT
CTGAATGTCTCTGAAGAACTTTTTAATTTTGAAGATGGTGCAATTCCAAAAACTGCCACT
GGTAGTAAATCTCAACTATCTGCTTCAATTGAACAATCTTTTGGTGAGAAAATATCTCCA
CAAAGTCATTAAATTCAAATAT
sequence update 1999. 4. 7
Translated Amino Acid sequence 
ELNCSTATMRQIASTLVDPYTACAGSAGALYGPLHGGXNEAVLRMLEAIGTIENIPKFIE
QVKQKKQRLMGFGHRVYKSYDPRAKILKTVTMEIFALLGKNPLMQIATELERLALSDSYF
IERQLYPNVDFYSGIIYKSMGFPTDMFPVLFSIPRAAGWLAHWVEELADPELRIFRPRQI
YMGRRNMNYVPMDARQVQQHNSGEKLSSFSSGFDRRRDVSECL*rtf*f*rwcnsknchw
**isticfn*tifw*enistkslnsn
Translated Amino Acid sequence (All Frames) 
Frame A:
mn*ivqqqq*dklhqhwlthiqhvqvvqvhcmvhymvvxmkqc*ecwrqleplkifqsll
nklnkrnnv*wvldivftnhmihvlkylkp*qwrslhywvrih*cksqqnwkdwhsltai
s*rdnsiqmlistlvsftrvwvsqlicfqcysqfqellvgwliglknwliqnfvsldhvk
siwvvei*imfqwmlvkfnniivvrnyphsllvsivvemslnvseelfnfedgaipktat
gsksqlsasieqsfgekispqsh*iqi


Frame B:
*iklfnsnnetncinig*piysmcr*crcivwsitwwxq*ssvknvggnwnh*kyskvy*
ts*tkettfngfwtsclqii*stc*nt*nrnngdlctig*esidanrnrigkigtl*qlf
hrettlskc*fllwyhlqeygfpn*yvssvilnskscwlvgslg*rig*srtsyl*ttsn
lygs*kyelcsngcsssstt**w*eiililfwfrss*rcl*mslknflilkmvqfqklpl
vvnlnyllqlnnllvrkylhkvikfky


Frame C:
ELNCSTATMRQIASTLVDPYTACAGSAGALYGPLHGGXNEAVLRMLEAIGTIENIPKFIE
QVKQKKQRLMGFGHRVYKSYDPRAKILKTVTMEIFALLGKNPLMQIATELERLALSDSYF
IERQLYPNVDFYSGIIYKSMGFPTDMFPVLFSIPRAAGWLAHWVEELADPELRIFRPRQI
YMGRRNMNYVPMDARQVQQHNSGEKLSSFSSGFDRRRDVSECL*rtf*f*rwcnsknchw
**isticfn*tifw*enistkslnsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG229 (SSG229Q) /CSM/SS/SSG2-B/SSG229Q.Seq.d/                       1584   0.0
SSD179 (SSD179Q) /CSM/SS/SSD1-D/SSD179Q.Seq.d/                       1174   0.0
SSC167 (SSC167Q) /CSM/SS/SSC1-C/SSC167Q.Seq.d/                        973   0.0
SLH712 (SLH712Q) /CSM/SL/SLH7-A/SLH712Q.Seq.d/                        971   0.0
SSK530 (SSK530Q) /CSM/SS/SSK5-B/SSK530Q.Seq.d/                        105   1e-21
SSG238 (SSG238Q) /CSM/SS/SSG2-B/SSG238Q.Seq.d/                        105   1e-21
SSF821 (SSF821Q) /CSM/SS/SSF8-A/SSF821Q.Seq.d/                        105   1e-21
SLD239 (SLD239Q) /CSM/SL/SLD2-B/SLD239Q.Seq.d/                        105   1e-21
SFE393 (SFE393Q) /CSM/SF/SFE3-D/SFE393Q.Seq.d/                        105   1e-21
SFC695 (SFC695Q) /CSM/SF/SFC6-D/SFC695Q.Seq.d/                        105   1e-21
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.  1312  0.0  2
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene.  1237  0.0  1
AY124377|AY124377.1 Dictyostelium discoideum citrate synthase (cshA) mRNA, complete cds.    76  6e-27  3
CC886079|CC886079.1 SALK_148183.36.85.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_148183.36.85.x, genomic survey sequence.    48  1e-08  2
CC885856|CC885856.1 SALK_147925.54.55.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_147925.54.55.x, genomic survey sequence.    48  2e-08  2
CD475400|CD475400.1 nad03-20ms3-b04 Nad03 Nuphar advena cDNA clone nad03-20ms3-b04 5', mRNA sequence.    70  5e-08  1
BU822514|BU822514.1 UB38BPG02 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence.    58  5e-08  2
BG595902|BG595902.1 EST494580 cSTS Solanum tuberosum cDNA clone cSTS12M3 5' sequence, mRNA sequence.    58  1e-06  2
BI432696|BI432696.1 EST535457 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCAT93 5' sequence, mRNA sequence.    58  1e-06  2
BM408299|BM408299.1 EST582626 potato roots Solanum tuberosum cDNA clone cPRO33D24 5' end, mRNA sequence.    58  1e-06  2
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF310892_1(AF310892|pid:none) Dictyostelium discoideum citrate s...   392   e-126
AB109907_1(AB109907|pid:none) Tetrahymena thermophila tgCS mRNA ...   276   7e-73
CP001099_363(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...   272   8e-72
AB167269_1(AB167269|pid:none) Chlorobium limicola cit gene for c...   271   2e-71
AK120755_1(AK120755|pid:none) Oryza sativa Japonica Group cDNA c...   265   1e-69
(Q9SJH7) RecName: Full=Citrate synthase 3, peroxisomal;         ...   263   6e-69
CP000909_3729(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   262   8e-69
CP001364_4025(CP001364|pid:none) Chloroflexus sp. Y-400-fl, comp...   262   8e-69
AB334779_1(AB334779|pid:none) Glycine max mRNA for peroxisomal c...   262   8e-69
CP000804_571(CP000804|pid:none) Roseiflexus castenholzii DSM 139...   262   1e-68
protein update 2009. 7. 7
PSORT 

 psg: 0.74  gvh: 0.45  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSG229 is cyt
5' end seq. ID SSG229F
5' end seq. 
>SSG229F.Seq
ATGAATTAAATTGTTCAACAGCAACAATGAGACAAATTGCATCAACATTGGTTGACCCAT
ATACAGCATGTGCAGGTAGTGCAGGTGCATTGTATGGTCCATTACATGGTGGTGTCAATG
AAGCAGTGTTAAGAATGTTGGAGGCAATTGGAACCATTGAAAATATTCCAAAGTTTATTG
AACAAGTTAAACAAAAGAAACAACGTTTAATGGGTTTTGGACATCGTGTTTACAAATCAT
ATGATCCACGTGCTAAAATACTTAAAACCGTAACAATGGAGATCTTTGCACTATTGGGTA
AGAATCCATTGATGCAAATCGCAACAGAATTGGAAAGATTGGCACTCTCTGACAGCTATT
TCATAGAGAGACAACTCTATCCAAATGTTGATTTCTACTCTGGTATCATTTACAAGAGTA
TGGGTTTCCCAACTGATATGTTTCCAGTGTTATTCTCAATTCCAAGAGCTGCTGGTTGGT
TGGCTCATTGGGTTGAAGAATTGGCTGATCCAGAACTTCGTATCTTTAGACCACGTCAAA
TCTATATGGGTCGTAGAAATATGAATTATGTTCCAATGGATGCTCGTCAAGTTCAACAAC
ATAATAGTGGTGAGAAATTATCCTCATTCTCTTCTGGTTTCGATCGTCGTAGAGATGTCT
CTGA----------
Length of 5' end seq. 664
3' end seq. ID SSG229Z
3' end seq. 
>SSG229Z.Seq
----------TGCATCAACATTGGTTGACCCATATACAGCATGTGCAGGTAGTGCAGGTG
CATTGTATGGTCCATTACATGGTGGTGCCAATGAAGCAGTGTTAAGAATGTTGGAGGCAA
TTGGAACCATTGAAAATATTCCAAAGTTTATTGAACAAGTTAAACAAAAGAAACAACGTT
TAATGGGTTTTGGACATCGTGTTTACAAATCATATGATCCACGTGCTAAAATACTTAAAA
CCGTAACAATGGAGATCTTTGCACTATTGGGTAAGAATCCATTGATGCAAATCGCAACAG
AATTGGAAAGATTGGCACTCTCTGACAGCTATTTCATAGAGAGACAACTCTATCCAAATG
TTGATTTCTACTCTGGTATCATTTACAAGAGTATGGGTTTCCCAACTGATATGTTTCCAG
TGTTATTCTCAATTCCAAGAGCTGCTGGTTGGTTGGCTCATTGGGTTGAAGAATTGGCTG
ATCCAGAACTTCGTATCTTTAGACCACGTCAAATCTATATGGGTCGTAGAAATATGAATT
ATGTTCCAATGGATGCTCGTCAAGTTCAACAACATAATAGTGGTGAGAAATTATCCTCAT
TCTCTTCTGGTTTCGATCGTCGTAGAGATGTCTCTGAAGAACTTTTTAATTTTGAAGATG
GTGCAATTCCAAAAACTGCCACTGGTAGTAAATCTCAACTATCTGCTTCAATTGAACAAT
CTTTTGGTGAGAAAATATCTCCACAAAGTCATTAAATTCAAATATTCATTTTTGGTA
Length of 3' end seq. 767
Connected seq. ID SSG229P
Connected seq. 
>SSG229P.Seq
ATGAATTAAATTGTTCAACAGCAACAATGAGACAAATTGCATCAACATTGGTTGACCCAT
ATACAGCATGTGCAGGTAGTGCAGGTGCATTGTATGGTCCATTACATGGTGGTGTCAATG
AAGCAGTGTTAAGAATGTTGGAGGCAATTGGAACCATTGAAAATATTCCAAAGTTTATTG
AACAAGTTAAACAAAAGAAACAACGTTTAATGGGTTTTGGACATCGTGTTTACAAATCAT
ATGATCCACGTGCTAAAATACTTAAAACCGTAACAATGGAGATCTTTGCACTATTGGGTA
AGAATCCATTGATGCAAATCGCAACAGAATTGGAAAGATTGGCACTCTCTGACAGCTATT
TCATAGAGAGACAACTCTATCCAAATGTTGATTTCTACTCTGGTATCATTTACAAGAGTA
TGGGTTTCCCAACTGATATGTTTCCAGTGTTATTCTCAATTCCAAGAGCTGCTGGTTGGT
TGGCTCATTGGGTTGAAGAATTGGCTGATCCAGAACTTCGTATCTTTAGACCACGTCAAA
TCTATATGGGTCGTAGAAATATGAATTATGTTCCAATGGATGCTCGTCAAGTTCAACAAC
ATAATAGTGGTGAGAAATTATCCTCATTCTCTTCTGGTTTCGATCGTCGTAGAGATGTCT
CTGA----------TGCATCAACATTGGTTGACCCATATACAGCATGTGCAGGTAGTGCA
GGTGCATTGTATGGTCCATTACATGGTGGTGCCAATGAAGCAGTGTTAAGAATGTTGGAG
GCAATTGGAACCATTGAAAATATTCCAAAGTTTATTGAACAAGTTAAACAAAAGAAACAA
CGTTTAATGGGTTTTGGACATCGTGTTTACAAATCATATGATCCACGTGCTAAAATACTT
AAAACCGTAACAATGGAGATCTTTGCACTATTGGGTAAGAATCCATTGATGCAAATCGCA
ACAGAATTGGAAAGATTGGCACTCTCTGACAGCTATTTCATAGAGAGACAACTCTATCCA
AATGTTGATTTCTACTCTGGTATCATTTACAAGAGTATGGGTTTCCCAACTGATATGTTT
CCAGTGTTATTCTCAATTCCAAGAGCTGCTGGTTGGTTGGCTCATTGGGTTGAAGAATTG
GCTGATCCAGAACTTCGTATCTTTAGACCACGTCAAATCTATATGGGTCGTAGAAATATG
AATTATGTTCCAATGGATGCTCGTCAAGTTCAACAACATAATAGTGGTGAGAAATTATCC
TCATTCTCTTCTGGTTTCGATCGTCGTAGAGATGTCTCTGAAGAACTTTTTAATTTTGAA
GATGGTGCAATTCCAAAAACTGCCACTGGTAGTAAATCTCAACTATCTGCTTCAATTGAA
CAATCTTTTGGTGAGAAAATATCTCCACAAAGTCATTAAATTCAAATATTCATTTTTGGT
A
Length of connected seq. 1431
Full length Seq ID SSG229E
Full length Seq. 
>SSG229E.Seq
ATGAATTAAATTGTTCAACAGCAACAATGAGACAAATTGCATCAACATTGGTTGACCCAT
ATACAGCATGTGCAGGTAGTGCAGGTGCATTGTATGGTCCATTACATGGTGGTGNCAATG
AAGCAGTGTTAAGAATGTTGGAGGCAATTGGAACCATTGAAAATATTCCAAAGTTTATTG
AACAAGTTAAACAAAAGAAACAACGTTTAATGGGTTTTGGACATCGTGTTTACAAATCAT
ATGATCCACGTGCTAAAATACTTAAAACCGTAACAATGGAGATCTTTGCACTATTGGGTA
AGAATCCATTGATGCAAATCGCAACAGAATTGGAAAGATTGGCACTCTCTGACAGCTATT
TCATAGAGAGACAACTCTATCCAAATGTTGATTTCTACTCTGGTATCATTTACAAGAGTA
TGGGTTTCCCAACTGATATGTTTCCAGTGTTATTCTCAATTCCAAGAGCTGCTGGTTGGT
TGGCTCATTGGGTTGAAGAATTGGCTGATCCAGAACTTCGTATCTTTAGACCACGTCAAA
TCTATATGGGTCGTAGAAATATGAATTATGTTCCAATGGATGCTCGTCAAGTTCAACAAC
ATAATAGTGGTGAGAAATTATCCTCATTCTCTTCTGGTTTCGATCGTCGTAGAGATGTCT
CTGAATGTCTCTGAAGAACTTTTTAATTTTGAAGATGGTGCAATTCCAAAAACTGCCACT
GGTAGTAAATCTCAACTATCTGCTTCAATTGAACAATCTTTTGGTGAGAAAATATCTCCA
CAAAGTCATTAAATTCAAATAT
Length of full length seq. 802