>SSG217 (SSG217Q) /CSM/SS/SSG2-A/SSG217Q.Seq.d/
XXXXXXXXXXCTTTATTAGCAATTTTTAATGTTGTCTCATGGGGTATACCATTTGCAATT
TCAATGGTTATAACAATGACAAATTCAATAGTTGTAAATTCTGATGGATGGTGTGAGGTT
GCAAAACCAATGGAATTATCATTATGGTTCCTTCCATTATTTTTATGTTTATTAGTTTGT
TCAATTTATTATTTTAGATTAAGAAGATTATTTAGAAGTAAATTTGAATATAGATTACAA
ATTAATGATCGTTTAAAACAATTAGATTCAACTATATCTAGACGTTTAACACTTTATATT
GTTGTATTTGTAATTTGTTGGTTACCAGATGTAATTCAACATTTCATATCATTCTTTTCA
AAATGTACTTTCTTCCCACTTTTAATATTACAAAATATTTTAACACCATCACAAGGATTT
TGGAATTTTTGGATTTATTCATACACAAATAAAATTGCACGTTTCACACCTTCAAATGAT
GAAAATAAAAGATTATTACAATAAATTATTTTAAAATAATCAAAAAAAAAAAAAATAAAA
ATAAAAATAAAAAA

---LLAIFNVVSWGIPFAISMVITMTNSIVVNSDGWCEVAKPMELSLWFLPLFLCLLVCS
IYYFRLRRLFRSKFEYRLQINDRLKQLDSTISRRLTLYIVVFVICWLPDVIQHFISFFSK
CTFFPLLILQNILTPSQGFWNFWIYSYTNKIARFTPSNDENKRLLQ*iilk*skkkkiki
kik

Frame A:
---fisnf*cclmgyticnfngynndkfnsckf*wmv*gcktngiiimvpsiifmfislf
nllf*ikkii*k*i*i*itn**sfktirfnyi*tfntlyccicnllvtrcnstfhiilfk
myflptfnitkyfntitrilefldlfihk*nctfhtfk**k*kiitinyfkiikkkknkn
knkk


Frame B:
---LLAIFNVVSWGIPFAISMVITMTNSIVVNSDGWCEVAKPMELSLWFLPLFLCLLVCS
IYYFRLRRLFRSKFEYRLQINDRLKQLDSTISRRLTLYIVVFVICWLPDVIQHFISFFSK
CTFFPLLILQNILTPSQGFWNFWIYSYTNKIARFTPSNDENKRLLQ*iilk*skkkkiki
kik


Frame C:
---y*qflmlshgvyhlqfqwl*q*qiq*l*ilmdgvrlqnqwnyhygsfhyfyvy*fvq
fiild*edylevnlnidyklmiv*nn*iqlyldv*hfillyl*fvgyqm*fnisyhsfqn
vlsshf*yykif*hhhkdfgifgfihtqiklhvshlqmmkikdyynklf*nnqkkkk*k*
k*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG217 (SSG217Q) /CSM/SS/SSG2-A/SSG217Q.Seq.d/                       1013   0.0
VFO867 (VFO867Q) /CSM/VF/VFO8-C/VFO867Q.Seq.d/                        355   5e-97
VFF619 (VFF619Q) /CSM/VF/VFF6-A/VFF619Q.Seq.d/                         40   0.035
SSL148 (SSL148Q) /CSM/SS/SSL1-B/SSL148Q.Seq.d/                         40   0.035
SHK663 (SHK663Q) /CSM/SH/SHK6-C/SHK663Q.Seq.d/                         40   0.035
VSK255 (VSK255Q) /CSM/VS/VSK2-C/VSK255Q.Seq.d/                         38   0.14
VFI872 (VFI872Q) /CSM/VF/VFI8-C/VFI872Q.Seq.d/                         38   0.14
SSM749 (SSM749Q) /CSM/SS/SSM7-C/SSM749Q.Seq.d/                         38   0.14
SSE336 (SSE336Q) /CSM/SS/SSE3-B/SSE336Q.Seq.d/                         38   0.14
SSD769 (SSD769Q) /CSM/SS/SSD7-C/SSD769Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY360135|AY360135.1 Dictyostelium discoideum putative G protein-coupled receptor (crlC) gene, complete cds.   545   0.0    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   1e-12  19
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   1e-09  25
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   6e-09  24
AX344573|AX344573.1 Sequence 24 from Patent WO0200932.             34   1e-07  16
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   1e-07  23
AX344561|AX344561.1 Sequence 12 from Patent WO0200932.             46   2e-07  11
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   3e-07  12
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   4e-07  24
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    32   5e-07  16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6UUW6) RecName: Full=Cyclic AMP receptor-like protein C;  &AY3...   297   1e-79
(Q6UUW5) RecName: Full=Cyclic AMP receptor-like protein B;  &AY3...    55   2e-06
AF288618_1(AF288618|pid:none) Dirofilaria immitis chitin synthas...    40   0.040
(P13773) RecName: Full=Cyclic AMP receptor 1;          Short=cAM...    40   0.052
EU797669_1(EU797669|pid:none) Dictyostelium aureostipes strain Y...    39   0.068
EU797668_1(EU797668|pid:none) Polysphondylium pallidum strain PN...    38   0.20
BC105663_1(BC105663|pid:none) Mus musculus dopamine receptor 2, ...    37   0.26
X53278_1(X53278|pid:none) R.norvegicus mRNA for D2 dopamine rece...    37   0.26
(P61168) RecName: Full=D(2) dopamine receptor; AltName: Full=Dop...    37   0.26
AF293964_1(AF293964|pid:none) Canis familiaris dopamine D2 recep...    37   0.34

 psg: 0.95  gvh: 0.71  alm: 0.24  top: 0.33  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.18  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SSG217 is exc

>SSG217Z.Seq
----------CTTTATTAGCAATTTTTAATGTTGTCTCATGGGGTATACCATTTGCAATT
TCAATGGTTATAACAATGACAAATTCAATAGTTGTAAATTCTGATGGATGGTGTGAGGTT
GCAAAACCAATGGAATTATCATTATGGTTCCTTCCATTATTTTTATGTTTATTAGTTTGT
TCAATTTATTATTTTAGATTAAGAAGATTATTTAGAAGTAAATTTGAATATAGATTACAA
ATTAATGATCGTTTAAAACAATTAGATTCAACTATATCTAGACGTTTAACACTTTATATT
GTTGTATTTGTAATTTGTTGGTTACCAGATGTAATTCAACATTTCATATCATTCTTTTCA
AAATGTACTTTCTTCCCACTTTTAATATTACAAAATATTTTAACACCATCACAAGGATTT
TGGAATTTTTGGATTTATTCATACACAAATAAAATTGCACGTTTCACACCTTCAAATGAT
GAAAATAAAAGATTATTACAATAAATTATTTTAAAATAATCAAAAAAAAAAAAAATAAAA
ATAAAAATAAAAAA