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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG213
Library SS
(Link to library)
Clone ID SSG213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16538-1
Original site URL
Representative seq. ID SSG213P
(Link to Original site)
Representative DNA sequence 
>SSG213 (SSG213Q) /CSM/SS/SSG2-A/SSG213Q.Seq.d/
AAATTTACGTTTGGAATTTAGCTACTGGTACTATTCTCACCAATTTCCAAGGTCATGAAG
GTTGGGTCAAAACACTTTACGCTCATAACAATATGCTCTACAGTGGTTCTCATTATGAAA
CTATTAGAATTTGGGATCTTAAAACTACACGTTGCGCTGAGAGATCCCCTCATAATTTCC
CCAAAACGTAACCATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCACGAGTGAGT
CTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTG
AGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT
GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGA
TATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGAC
TTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTT
GTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCG
ACGCTGAGTAGATTXXXXXXXXXXCAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTA
ACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGC
CAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGC
TGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATAT
CGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGA
CAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAG
CACGTTGCGTCAATACCATCAAATGTAAGGATCGTGTTGAAACTCTTCACGTCACTAATC
AAGGTATCTTTGCAGGTAGCGGTGATTGGTTACAAGTTTTCAGTCATGATAAATACGAAA
ATTTAGCTTCTCTCAATACAAGATCTTCAATTCTTTGTCTTTGGAGAAATCAAAATCAAT
TATTTACTGGTTCATTAGCTAGTAATCTTAAAGTTTGGTCTTGGGATAAAATGTAAACAA
AAAAAAAAAAAAAAAATTAGAATAGAATACAAAAATTTACATTTTTTAAAAAAAAAAAAA
AAACAAATAAAAA
sequence update 1998.10.13
Translated Amino Acid sequence 
kftfgi*llvlfspiskvmkvgskhftliticstvvlimkllefgilklhvalrdpliis
pkrnhv*idfe*aglqprvslplllcsqnaaklpclsellrvrfdf*lc*pgsacpnlvs
eherpqanmlveasgrlaa*yqnalscsfgygvglvrrqdfsslgrflqsafasnry*qv
vwvfefqqvs*LLESMAPLPTLSR---

---QRVALCGGDDYLTIGRFV*cyvlfslwlagygqvr*e*efysqvrrgkptlsc*vvl
svirgrigkesrvkyrvrtfccliidfwrnhlii*qdvylp*lndfdknh*gihqhvasi
psnvrivlklftslikvslqvavigykfsvmintki*llsiqdlqffvfgeikinyllvh
*lvilkfglgikckqkkkkkirieyknlhflkkkkkqik
Translated Amino Acid sequence (All Frames) 
Frame A:
kftfgi*llvlfspiskvmkvgskhftliticstvvlimkllefgilklhvalrdpliis
pkrnhv*idfe*aglqprvslplllcsqnaaklpclsellrvrfdf*lc*pgsacpnlvs
eherpqanmlveasgrlaa*yqnalscsfgygvglvrrqdfsslgrflqsafasnry*qv
vwvfefqqvs*LLESMAPLPTLSR---

---QRVALCGGDDYLTIGRFV*cyvlfslwlagygqvr*e*efysqvrrgkptlsc*vvl
svirgrigkesrvkyrvrtfccliidfwrnhlii*qdvylp*lndfdknh*gihqhvasi
psnvrivlklftslikvslqvavigykfsvmintki*llsiqdlqffvfgeikinyllvh
*lvilkfglgikckqkkkkkirieyknlhflkkkkkqik

Frame B:
nlrlefsywyyshqfprs*rlgqntlrs*qyalqwfsl*ny*nlgs*nytlr*eips*fp
qnvtmce*ilskqgcshe*vfpcycvarmpqnfha*anc*eyvsisdcvslevlvptlfl
smnarkptc*lkhqgd*qhdiktl*aarsama*a*svgrtfqvsegffnlhslridinkl
fgcsnfnr*vsc*npwllcrr*vd---

---seslfvevtit*qsvdsfdvmfcsrfgwqvtakfgksesftvk*gvasqr*avesf*
v*fgaelvkrvv*niefahfvv*llifgeti*sydkmciylnlmilikiirgfistlrqy
hqm*gsc*nssrh*srylcr*r*lvtsfqs**irkfsfsqykifnslsleksksiiywfi
s**s*slvlg*nvnkkkkkkle*ntkiyif*kkkknk*k

Frame C:
iyvwnlatgtiltnfqghegwvktlyahnnmlysgshyetiriwdlkttrcaersphnfp
kt*pcvnrf*vsrvaatsesslviv*pecrktsmpkrtvestfrfltvlawkclsqpcf*
a*tpasqhvs*siraissmiskrsellvrlwrrpsp*aglfksrkvssicirfe*iltsc
lgvristgklvarihgsfadae*i---

---asrslwr*rlpnnrsirlmlcfvlalvgrlrpssvrvrvlqsskawqanvkllsrfk
cnsgqnw*resckissshillsdy*flakpfdhmtrcvstlt**f**kslgdssarcvnt
ikckdrvetlhvtnqgifagsgdwlqvfshdkyenlaslntrssilclwrnqnqlftgsl
asnlkvwswdkm*tkkkkkn*nriqkftffkkkkktnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG213 (SSG213Q) /CSM/SS/SSG2-A/SSG213Q.Seq.d/                       2315   0.0
SSK522 (SSK522Q) /CSM/SS/SSK5-A/SSK522Q.Seq.d/                        852   0.0
VSI529 (VSI529Q) /CSM/VS/VSI5-B/VSI529Q.Seq.d/                        680   0.0
VSJ457 (VSJ457Q) /CSM/VS/VSJ4-C/VSJ457Q.Seq.d/                        605   e-172
VSJ510 (VSJ510Q) /CSM/VS/VSJ5-A/VSJ510Q.Seq.d/                        595   e-169
SSH817 (SSH817Q) /CSM/SS/SSH8-A/SSH817Q.Seq.d/                        549   e-155
VSJ532 (VSJ532Q) /CSM/VS/VSJ5-B/VSJ532Q.Seq.d/                        531   e-150
FC-AS10 (FC-AS10Q) /CSM/FC/FC-AS/FC-AS10Q.Seq.d/                      472   e-132
FC-AN09 (FC-AN09Q) /CSM/FC/FC-AN/FC-AN09Q.Seq.d/                      472   e-132
FC-BG19 (FC-BG19Q) /CSM/FC/FC-BG/FC-BG19Q.Seq.d/                      460   e-128
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE015191|AE015191.1 Shigella flexneri 2a str. 301 section 154 of 412 of the completegenome.   918   0.0    3
AL627272|AL627272.1 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,  complete chromosome; segment 8/20.   914   0.0    4
AC146744|AC146744.16 Medicago truncatula clone mth2-176p12, WORKING DRAFT SEQUENCE, 6 ordered pieces.   910   0.0    4
AC068063|AC068063.2 Homo sapiens clone RP11-57E11, WORKING DRAFT SEQUENCE, 53 unordered pieces.   910   0.0    2
AC092792|AC092792.2 Homo sapiens chromosome UNK clone RP11-806O14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.   910   0.0    4
AC005636|AC005636.6 Drosophila melanogaster chromosome 2 clone DS05148 (D394) map 41C6-41D1 strain y; cn bw sp, WORKING DRAFT SEQUENCE, 18 unordered pieces.   910   0.0    3
AE015131|AE015131.1 Shigella flexneri 2a str. 301 section 94 of 412 of the complete genome.   910   0.0    2
AE015109|AE015109.1 Shigella flexneri 2a str. 301 section 72 of 412 of the complete genome.   910   0.0    2
AF332859|AF332859.1 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exon 5 and partial cds.   910   0.0    4
AX877144|AX877144.1 Sequence 12049 from Patent EP1074617.         908   0.0    2
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE005674_1692(AE005674|pid:none) Shigella flexneri 2a str. 301, ...   294   4e-78
AB366440_79(AB366440|pid:none) Salmonella enterica subsp. enteri...   294   4e-78
AF386526_83(AF386526|pid:none) Shigella flexneri 2a str. 301 vir...   294   4e-78
CU928145_1110(CU928145|pid:none) Escherichia coli 55989 chromoso...   294   4e-78
AE005674_485(AE005674|pid:none) Shigella flexneri 2a str. 301, c...   293   1e-77
AC149135_16(AC149135|pid:none) Medicago truncatula chromosome 2 ...   288   2e-76
AC068901_7(AC068901|pid:none) Arabidopsis thaliana chromosome 1 ...   288   3e-76
AJ851089_77(AJ851089|pid:none) Uncultured bacterium pRSB107 plas...   288   3e-76
CU928144_37(CU928144|pid:none) Escherichia fergusonii str. ATCC ...   288   3e-76
AF307748_1(AF307748|pid:none) Tn10 delivery vector pHV1249 trans...   288   3e-76
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSG213 is nuc
5' end seq. ID SSG213F
5' end seq. 
>SSG213F.Seq
AAATTTACGTTTGGAATTTAGCTACTGGTACTATTCTCACCAATTTCCAAGGTCATGAAG
GTTGGGTCAAAACACTTTACGCTCATAACAATATGCTCTACAGTGGTTCTCATTATGAAA
CTATTAGAATTTGGGATCTTAAAACTACACGTTGCGCTGAGAGATCCCCTCATAATTTCC
CCAAAACGTAACCATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCACGAGTGAGT
CTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTG
AGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT
GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGA
TATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGAC
TTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTT
GTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCG
ACGCTGAGTAGATT----------
Length of 5' end seq. 614
3' end seq. ID SSG213Z
3' end seq. 
>SSG213Z.Seq
----------CAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATT
CGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGA
GTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTT
AAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATT
TTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCT
ACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGCACGTTGCGTCAAT
ACCATCAAATGTAAGGATCGTGTTGAAACTCTTCACGTCACTAATCAAGGTATCTTTGCA
GGTAGCGGTGATTGGTTACAAGTTTTCAGTCATGATAAATACGAAAATTTAGCTTCTCTC
AATACAAGATCTTCAATTCTTTGTCTTTGGAGAAATCAAAATCAATTATTTACTGGTTCA
TTAGCTAGTAATCTTAAAGTTTGGTCTTGGGATAAAATGTAAACAAAAAAAAAAAAAAAA
AATTAGAATAGAATACAAAAATTTACATTTTTTAAAAAAAAAAAAAAAACAAATAAAAA
Length of 3' end seq. 649
Connected seq. ID SSG213P
Connected seq. 
>SSG213P.Seq
AAATTTACGTTTGGAATTTAGCTACTGGTACTATTCTCACCAATTTCCAAGGTCATGAAG
GTTGGGTCAAAACACTTTACGCTCATAACAATATGCTCTACAGTGGTTCTCATTATGAAA
CTATTAGAATTTGGGATCTTAAAACTACACGTTGCGCTGAGAGATCCCCTCATAATTTCC
CCAAAACGTAACCATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCACGAGTGAGT
CTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTG
AGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT
GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGA
TATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGAC
TTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTT
GTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCG
ACGCTGAGTAGATT----------CAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTA
ACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGC
CAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGC
TGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATAT
CGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGA
CAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAG
CACGTTGCGTCAATACCATCAAATGTAAGGATCGTGTTGAAACTCTTCACGTCACTAATC
AAGGTATCTTTGCAGGTAGCGGTGATTGGTTACAAGTTTTCAGTCATGATAAATACGAAA
ATTTAGCTTCTCTCAATACAAGATCTTCAATTCTTTGTCTTTGGAGAAATCAAAATCAAT
TATTTACTGGTTCATTAGCTAGTAATCTTAAAGTTTGGTCTTGGGATAAAATGTAAACAA
AAAAAAAAAAAAAAAATTAGAATAGAATACAAAAATTTACATTTTTTAAAAAAAAAAAAA
AAACAAATAAAAA
Length of connected seq. 1263
Full length Seq ID -
Full length Seq. -
Length of full length seq. -