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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG212
Library SS
(Link to library)
Clone ID SSG212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09907-1
Original site URL
Representative seq. ID SSG212E
(Link to Original site)
Representative DNA sequence 
>SSG212 (SSG212Q) /CSM/SS/SSG2-A/SSG212Q.Seq.d/
GATTTACTTAAAGGTAATTTAACAAAATATGAAGAAATTAAAGAAAAACATAAATCAAAT
TTACAAATTATCAGTGGCCAAATTATGAAATTACATACAATTTTGCAAACTGTTGAAAAT
AATTTAAATCAACAATTAATTACAAATTTAGATGAAAATACTGATATTAATGATGTTTTC
AACACAAAAGTCAAGGAAGAATTAAAAGTTTTATCAAAAGTAATAAGTCTAAAAAATGAT
TATAATTTCATTGATGAAAGCCAAAATTTAAATGATAAACACATTCAAATCATTAAAGAT
TCATATCAAAGTAAAAAGATTTTGACATGTCATTTTATTGCCAGATTATTCAAGTTCAAA
GGTTACCATTTCAGAGTCATCATTTAATTCAATTAAAGATTTGTTTAATTTAATAATTAG
TATTGATAAATACCATGGACAATTGCCTCCTACTAATGAACATTCACCTCTAAAACAGTT
GTCAAGATACAGATGGGGTAAATTTATATTTACAGTTTACAATGATGGTGATAGTATACC
AGATGATACAGAATCTCTTGCAATTGGAGAGGGACAGCGTCTACCTAACTAAAACCATGC
CAAAATCAACCAAAAGATTATTATTGCCCAATGGATTTAATCAATCATTAATATCATTAC
CAAAAACTGTTAGATCACTTTACCTTTTTAACATTGGTCTTCAATTGACTGAGGCTTCAA
TTCCTGAAACTGTAGATACACTCTTCTTTTGTGATGGATTTAGTCAAAAAATTACAAAGG
GAATAATTCCAAAATCAGTTAAAGAGGTGTTTTTCTATAATATAGTTCAACCACTTGAAA
AAGATTCTATCCCAAACACTGTTTCATTTGTGGGTCGTTCCCCTTCCTTTAAACATCCTC
TTGATGTTAAATCAATAAATCAAATTAATGACCGTGGCCTGTACATAATTCAAAATGAAT
AAACTTTTTATTTTAATACATTCTAGTAAAAAAGTTTTTTTCTATTAA
sequence update 1999. 4. 7
Translated Amino Acid sequence 
ft*r*fnki*rn*rkt*ikftnyqwpnyeitynfanc*k*fkstinykfr*ky*y**cfq
hksqgriksfiksnkskk*l*fh**kpkfk**thsnh*rfisk*kdfdmsfycqiiqvqr
lpfqshhliqlkicli**lvlintmdnclllmnihl*NSCQDTDGVNLYLQFTMMVIVYQ
MIQNLLQLERDSVYLTKTMPKSTKRLLLPNGFNQSLISLPKTVRSLYLFNIGLQLTEASI
PETVDTLFFCDGFSQKITKGIIPKSVKEVFFYNIVQPLEKDSIPNTVSFVGRSPSFKHPL
DVKSINQINDRGLYIIQNE*tfyfntf**ksffll
Translated Amino Acid sequence (All Frames) 
Frame A:
dllkgnltkyeeikekhksnlqiisgqimklhtilqtvennlnqqlitnldentdindvf
ntkvkeelkvlskvislkndynfidesqnlndkhiqiikdsyqskkiltchfiarlfkfk
gyhfrvii*fn*rfv*fnn*y**ipwtiasy**tftsktvvkiqmg*iyiyslq*w**yt
r*yriscnwrgtast*lkpcqnqpkdyycpmdlinh*yhyqklldhftfltlvfn*lrlq
flkl*ihssfvmdlvkklqre*fqnqlkrcfsii*fnhlkkilsqtlfhlwvvplplnil
lmlnq*iklmtvact*fkmnklfilihsskkvffy*


Frame B:
iylkvi*qnmkklkkninqiyklsvakl*nyiqfckllkii*inn*lqi*mkililmmfs
tqksrkn*kfyqk**v*kmiiislmkaki*mintfkslkihikvkrf*hvillpdysssk
vtisessfnsikdlfnliisidkyhgqlpptnehsplkqlsryrwgkfiftvyndgdsip
ddteslaigegqrlpn*nhakinqkiiiaqwi*siiniitknc*itlpf*hwssid*gfn
s*ncrytlll*wi*sknykgnnskis*rgvfl*ysstt*krfypkhcficgsfpfl*tss
*c*inksn**pwpvhnsk*inflf*yilvkkffsi


Frame C:
ft*r*fnki*rn*rkt*ikftnyqwpnyeitynfanc*k*fkstinykfr*ky*y**cfq
hksqgriksfiksnkskk*l*fh**kpkfk**thsnh*rfisk*kdfdmsfycqiiqvqr
lpfqshhliqlkicli**lvlintmdnclllmnihl*NSCQDTDGVNLYLQFTMMVIVYQ
MIQNLLQLERDSVYLTKTMPKSTKRLLLPNGFNQSLISLPKTVRSLYLFNIGLQLTEASI
PETVDTLFFCDGFSQKITKGIIPKSVKEVFFYNIVQPLEKDSIPNTVSFVGRSPSFKHPL
DVKSINQINDRGLYIIQNE*tfyfntf**ksffll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG212 (SSG212Q) /CSM/SS/SSG2-A/SSG212Q.Seq.d/                       1970   0.0
AFF384 (AFF384Q) /CSM/AF/AFF3-D/AFF384Q.Seq.d/                       1794   0.0
AFI349 (AFI349Q) /CSM/AF/AFI3-C/AFI349Q.Seq.d/                       1455   0.0
AFO491 (AFO491Q) /CSM/AF/AFO4-D/AFO491Q.Seq.d/                       1435   0.0
VFM849 (VFM849Q) /CSM/VF/VFM8-C/VFM849Q.Seq.d/                       1402   0.0
AFO886 (AFO886Q) /CSM/AF/AFO8-D/AFO886Q.Seq.d/                       1358   0.0
AFL683 (AFL683Q) /CSM/AF/AFL6-D/AFL683Q.Seq.d/                       1354   0.0
AFK879 (AFK879Q) /CSM/AF/AFK8-D/AFK879Q.Seq.d/                       1352   0.0
AFH120 (AFH120Q) /CSM/AF/AFH1-A/AFH120Q.Seq.d/                       1314   0.0
AFL540 (AFL540Q) /CSM/AF/AFL5-B/AFL540Q.Seq.d/                       1291   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   805  0.0  3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38  1e-06  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  7e-05  15
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34  2e-04  14
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    38  3e-04  13
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34  0.006  15
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.008  13
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    36  0.008  11
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    32  0.015  6
AC024244|AC024244.7 Homo sapiens chromosome 11 clone RP11-541L6, WORKING DRAFT SEQUENCE, 21 unordered pieces.    36  0.017  8
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...   247   e-162
AC115682_10(AC115682|pid:none) Dictyostelium discoideum chromoso...    87   2e-19
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            92   3e-17
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    91   8e-17
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    67   6e-16
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    86   2e-15
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    66   2e-13
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    79   2e-13
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    74   6e-12
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    71   5e-11
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSG212 is cyt
5' end seq. ID SSG212F
5' end seq. 
>SSG212F.Seq
GATTTACTTAAAGGTAATTTAACAAAATATGAAGAAATTAAAGAAAAACATAAATCAAAT
TTACAAATTATCAGTGGCCAAATTATGAAATTACATACAATTTTGCAAACTGTTGAAAAT
AATTTAAATCAACAATTAATTACAAATTTAGATGAAAATACTGATATTAATGATGTTTTC
AACACAAAAGTCAAGGAAGAATTAAAAGTTTTATCAAAAGTAATAAGTCTAAAAAATGAT
TATAATTTCATTGATGAAAGCCAAAATTTAAATGATAAACACATTCAAATCATTAAAGAT
TCATATCAAAGTAAAAAGATTTTGACATGTCATTTTAGTGATTTGCCAGATTATTCAAGT
TCAAAGGTTACCATTTCAGAGTCATCATTTAATTCAATTAAAGATTTGTTTAATTTAATA
ATTAGTATTGATAAATACCATGGACAATTGCCTCCTACTAATGAACATTCACCTCTAAAA
CAGTTGTCAAGATACAGATGGGGTAAATTTATATTTACAGTTTACAATGATGGTGATAGT
ATACCAGATGATACAGAATCTCTTGCAATTGGAGAGGGACAGCGTCTACCTAA-------
---
Length of 5' end seq. 593
3' end seq. ID SSG212Z
3' end seq. 
>SSG212Z.Seq
----------TTGCCAGATTATTCAAGTTCAAAGGTTACCATTTCAGAGTCATCATTTAA
TTCAATTAAAGATTTGTTTAATTTAATAATTAGTATTGATAAATACCATGGACAATTGCC
TCCTACTAATGAACATTCACCTCTAAAACAGTTGTCAAGATACAGATGGGGTAAATTTAT
ATTTACAGTTTACAATGATGGTGATAGTATACCAGATGATACAGAATCTCTTGCAATTGG
AGAGGGACAGCGTCTACCTAAAACCATGCCAAAATCAACCAAAAGATTATTATTGCCCAA
TGGATTTAATCAATCATTAATATCATTACCAAAAACTGTTAGATCACTTTACCTTTTTAA
CATTGGTCTTCAATTGACTGAGGCTTCAATTCCTGAAACTGTAGATACACTCTTCTTTTG
TGATGGATTTAGTCAAAAAATTACAAAGGGAATAATTCCAAAATCAGTTAAAGAGGTGTT
TTTCTATAATATAGTTCAACCACTTGAAAAAGATTCTATCCCAAACACTGTTTCATTTGT
GGGTCGTTCCCCTTCCTTTAAACATCCTCTTGATGTTAAATCAATAAATCAAATTAATGA
CCGTGGCCTGTACATAATTCAAAATGAATAAACTTTTTATTTTAATACATTCTAGTAAAA
AAGTTTTTTTCTATTAAAAAAAAAAAAA
Length of 3' end seq. 678
Connected seq. ID SSG212P
Connected seq. 
>SSG212P.Seq
GATTTACTTAAAGGTAATTTAACAAAATATGAAGAAATTAAAGAAAAACATAAATCAAAT
TTACAAATTATCAGTGGCCAAATTATGAAATTACATACAATTTTGCAAACTGTTGAAAAT
AATTTAAATCAACAATTAATTACAAATTTAGATGAAAATACTGATATTAATGATGTTTTC
AACACAAAAGTCAAGGAAGAATTAAAAGTTTTATCAAAAGTAATAAGTCTAAAAAATGAT
TATAATTTCATTGATGAAAGCCAAAATTTAAATGATAAACACATTCAAATCATTAAAGAT
TCATATCAAAGTAAAAAGATTTTGACATGTCATTTTAGTGATTTGCCAGATTATTCAAGT
TCAAAGGTTACCATTTCAGAGTCATCATTTAATTCAATTAAAGATTTGTTTAATTTAATA
ATTAGTATTGATAAATACCATGGACAATTGCCTCCTACTAATGAACATTCACCTCTAAAA
CAGTTGTCAAGATACAGATGGGGTAAATTTATATTTACAGTTTACAATGATGGTGATAGT
ATACCAGATGATACAGAATCTCTTGCAATTGGAGAGGGACAGCGTCTACCTAA-------
---TTGCCAGATTATTCAAGTTCAAAGGTTACCATTTCAGAGTCATCATTTAATTCAATT
AAAGATTTGTTTAATTTAATAATTAGTATTGATAAATACCATGGACAATTGCCTCCTACT
AATGAACATTCACCTCTAAAACAGTTGTCAAGATACAGATGGGGTAAATTTATATTTACA
GTTTACAATGATGGTGATAGTATACCAGATGATACAGAATCTCTTGCAATTGGAGAGGGA
CAGCGTCTACCTAAAACCATGCCAAAATCAACCAAAAGATTATTATTGCCCAATGGATTT
AATCAATCATTAATATCATTACCAAAAACTGTTAGATCACTTTACCTTTTTAACATTGGT
CTTCAATTGACTGAGGCTTCAATTCCTGAAACTGTAGATACACTCTTCTTTTGTGATGGA
TTTAGTCAAAAAATTACAAAGGGAATAATTCCAAAATCAGTTAAAGAGGTGTTTTTCTAT
AATATAGTTCAACCACTTGAAAAAGATTCTATCCCAAACACTGTTTCATTTGTGGGTCGT
TCCCCTTCCTTTAAACATCCTCTTGATGTTAAATCAATAAATCAAATTAATGACCGTGGC
CTGTACATAATTCAAAATGAATAAACTTTTTATTTTAATACATTCTAGTAAAAAAGTTTT
TTTCTATTAAAAAAAAAAAAA
Length of connected seq. 1271
Full length Seq ID SSG212E
Full length Seq. 
>SSG212E.Seq
GATTTACTTAAAGGTAATTTAACAAAATATGAAGAAATTAAAGAAAAACATAAATCAAAT
TTACAAATTATCAGTGGCCAAATTATGAAATTACATACAATTTTGCAAACTGTTGAAAAT
AATTTAAATCAACAATTAATTACAAATTTAGATGAAAATACTGATATTAATGATGTTTTC
AACACAAAAGTCAAGGAAGAATTAAAAGTTTTATCAAAAGTAATAAGTCTAAAAAATGAT
TATAATTTCATTGATGAAAGCCAAAATTTAAATGATAAACACATTCAAATCATTAAAGAT
TCATATCAAAGTAAAAAGATTTTGACATGTCATTTTATTGCCAGATTATTCAAGTTCAAA
GGTTACCATTTCAGAGTCATCATTTAATTCAATTAAAGATTTGTTTAATTTAATAATTAG
TATTGATAAATACCATGGACAATTGCCTCCTACTAATGAACATTCACCTCTAAAACAGTT
GTCAAGATACAGATGGGGTAAATTTATATTTACAGTTTACAATGATGGTGATAGTATACC
AGATGATACAGAATCTCTTGCAATTGGAGAGGGACAGCGTCTACCTAACTAAAACCATGC
CAAAATCAACCAAAAGATTATTATTGCCCAATGGATTTAATCAATCATTAATATCATTAC
CAAAAACTGTTAGATCACTTTACCTTTTTAACATTGGTCTTCAATTGACTGAGGCTTCAA
TTCCTGAAACTGTAGATACACTCTTCTTTTGTGATGGATTTAGTCAAAAAATTACAAAGG
GAATAATTCCAAAATCAGTTAAAGAGGTGTTTTTCTATAATATAGTTCAACCACTTGAAA
AAGATTCTATCCCAAACACTGTTTCATTTGTGGGTCGTTCCCCTTCCTTTAAACATCCTC
TTGATGTTAAATCAATAAATCAAATTAATGACCGTGGCCTGTACATAATTCAAAATGAAT
AAACTTTTTATTTTAATACATTCTAGTAAAAAAGTTTTTTTCTATTAA
Length of full length seq. 1008