SSG202
Library SS
(Link to library)
Clone ID SSG202
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10594-1|Contig-U15572-1
Original site URL
Representative seq. ID SSG202P
(Link to Original site)
Representative DNA sequence
>SSG202 (SSG202Q) /CSM/SS/SSG2-A/SSG202Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTAATGTTTTTTTTTATTATTATTAAT
TATTTATTATTTATTATTTATTATTTATTATTATTTTATAATTATACCATGAATATCGGT
TTTAATATTCTTTTTTAATAATTCTCTACGAATTAAGAGATCTGGAACTTCATTAAAAAA
GTAATTTTCAGCATCAATATCATATTGACGATACATGTAGTCATCGTAATTCTCTTTGAA
ATTTGGTAAACTATAAACGAAAGAAGAGCCAATGTAACCACCAATACCAGCGAATAAACA
AATTGCAAATGTTTTAATTGGTTTAATTGGATTGGTTTTCGCAATACTGTTGCCAATTAA
AGCACCAGCTATACCACCAGTGAAACCTGCTCTCCATATCAATTGCTTTGGAGTGACTGT
ATATCCATATCGATTATAAACGCATTTCATCTTATCATCAGTCGTAAGATCTGCTTTAAG
AATTGGTGGATTTTCAAGTAAATCTACCATTCTCTCTTTTTTCTCCTCCATCATTCTATT
CTTTTCCTCTTGTAATAAAAATCTATTCTTTTTCTCTAATCTCTTTACAGTTXXXXXXXX
XXGTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGCTG
CTGTTGCTGTTGCTGTTGCTTCTGTTTTTTTATTTTTTTCATCTATATTTTTATTATCTG
TATTTTTATTATTATTATTTGATGATCTTCTCCATGGAAGCCATGAAGATGATGACGATG
ACGATTCTTTATTCTCTGTCATTATATATATTTATTTATAAAAAA
sequence update 1998.10.13
Translated Amino Acid sequence
fffffffflyf*cfflllliiyyllfiiyyyfiiip*isvlifffnnslrikrsgtslkk
*fsasisy*rym*ss*fslkfgkl*tkeepm*ppipankqianvligliglvfaillpik
apaippvkpalhincfgvtvypyrl*THFILSSVVRSALRIGGFSSKSTILSFFSSIILF
FSSCNKNLFFFSNLFTV---

---LVLLLLLLLLLLLLLLLLLLLLLLLLLFFYFFHLYFYYLYFYYYYLMIFSMEAMKMM
TMTILYSLSLYIFIYKK


Translated Amino Acid sequence (All Frames)
Frame A:
fffffffffiflmfffiiinyllfiiyylllfynytmnigfnilf**fstn*eiwnfikk
vifsiniiltihvvivilfeiw*tinerranvttntse*tnckcfnwfnwigfrntvan*
stsyttsetcspyqllwsdcisisiinafhliisrkicfknwwifk*iyhslffllhhsi
lfll**ksilfl*slys---

---vgvvvvvvvvvvvvvavvaavavavasvflffssifllsvfllllfddllhgshedd
ddddslfsviiyiyl*k

Frame B:
fffffffflyf*cfflllliiyyllfiiyyyfiiip*isvlifffnnslrikrsgtslkk
*fsasisy*rym*ss*fslkfgkl*tkeepm*ppipankqianvligliglvfaillpik
apaippvkpalhincfgvtvypyrl*THFILSSVVRSALRIGGFSSKSTILSFFSSIILF
FSSCNKNLFFFSNLFTV---

---LVLLLLLLLLLLLLLLLLLLLLLLLLLFFYFFHLYFYYLYFYYYYLMIFSMEAMKMM
TMTILYSLSLYIFIYKK

Frame C:
ffffffffyifnvffyyy*lfiiyyllfiiil*lyheyrf*ysfliilyelrdlelh*ks
nfqhqyhiddtcshrnsl*nlvnykrkksqcnhqyqrinklqmf*lv*ldwfsqyccqlk
hqlyhq*nllsisiale*lyihidykrissyhqs*dll*elvdfqvnlpfslfsppsfys
fplvikiysfslislq---

---wccccccccccccccccccccccccfcffiffiyifiicifiiii**sspwkp*r**
r*rffilchyiylfik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ254 (VSJ254Q) /CSM/VS/VSJ2-C/VSJ254Q.Seq.d/ 965 0.0
SSG202 (SSG202Q) /CSM/SS/SSG2-A/SSG202Q.Seq.d/ 965 0.0
SSL257 (SSL257Q) /CSM/SS/SSL2-C/SSL257Q.Seq.d/ 42 0.013
AHN680 (AHN680Q) /CSM/AH/AHN6-D/AHN680Q.Seq.d/ 42 0.013
SHI616 (SHI616Q) /CSM/SH/SHI6-A/SHI616Q.Seq.d/ 40 0.052
SHG291 (SHG291Q) /CSM/SH/SHG2-D/SHG291Q.Seq.d/ 40 0.052
SHF237 (SHF237Q) /CSM/SH/SHF2-B/SHF237Q.Seq.d/ 40 0.052
SHC629 (SHC629Q) /CSM/SH/SHC6-B/SHC629Q.Seq.d/ 40 0.052
CHN872 (CHN872Q) /CSM/CH/CHN8-C/CHN872Q.Seq.d/ 40 0.052
CHE838 (CHE838Q) /CSM/CH/CHE8-B/CHE838Q.Seq.d/ 40 0.052

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 46 1e-07 13
AL137184|AL137184.15 Human DNA sequence from clone RP3-401D24 on chromosome 6. 40 1e-05 2
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 42 2e-05 7
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 36 5e-05 12
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 5e-05 6
BX248118|BX248118.10 Zebrafish DNA sequence from clone DKEY-100H21 in linkage group 20. 38 6e-05 9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 9e-05 13
BX571668|BX571668.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-47M8. 42 2e-04 2
BX296551|BX296551.4 Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23. 42 2e-04 2
BX927368|BX927368.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-15J16. 42 2e-04 2
dna update 2004. 2.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001399_682(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 35 2.9
CP001403_784(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,... 35 2.9
BX640438_55(BX640438|pid:none) Bordetella bronchiseptica strain ... 35 3.8
BX640413_6(BX640413|pid:none) Bordetella pertussis strain Tohama... 35 3.8

protein update 2009. 6.12
PSORT

psg: 0.77 gvh: 0.60 alm: 0.00 top: 0.40 tms: 0.27 mit: 0.50 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
28.0 %: mitochondrial
16.0 %: plasma membrane
4.0 %: Golgi
4.0 %: nuclear
4.0 %: peroxisomal
4.0 %: vacuolar

>> prediction for SSG202 is end

5' end seq. ID SSG202F
5' end seq.
>SSG202F.Seq
TTTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTAATGTTTTTTTTTATTATTATTAAT
TATTTATTATTTATTATTTATTATTTATTATTATTTTATAATTATACCATGAATATCGGT
TTTAATATTCTTTTTTAATAATTCTCTACGAATTAAGAGATCTGGAACTTCATTAAAAAA
GTAATTTTCAGCATCAATATCATATTGACGATACATGTAGTCATCGTAATTCTCTTTGAA
ATTTGGTAAACTATAAACGAAAGAAGAGCCAATGTAACCACCAATACCAGCGAATAAACA
AATTGCAAATGTTTTAATTGGTTTAATTGGATTGGTTTTCGCAATACTGTTGCCAATTAA
AGCACCAGCTATACCACCAGTGAAACCTGCTCTCCATATCAATTGCTTTGGAGTGACTGT
ATATCCATATCGATTATAAACGCATTTCATCTTATCATCAGTCGTAAGATCTGCTTTAAG
AATTGGTGGATTTTCAAGTAAATCTACCATTCTCTCTTTTTTCTCCTCCATCATTCTATT
CTTTTCCTCTTGTAATAAAAATCTATTCTTTTTCTCTAATCTCTTTACAGTT--------
--
Length of 5' end seq. 592
3' end seq. ID SSG202Z
3' end seq.
>SSG202Z.Seq
----------GTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGT
TGTTGCTGCTGTTGCTGTTGCTGTTGCTTCTGTTTTTTTATTTTTTTCATCTATATTTTT
ATTATCTGTATTTTTATTATTATTATTTGATGATCTTCTCCATGGAAGCCATGAAGATGA
TGACGATGACGATTCTTTATTCTCTGTCATTATATATATTTATTTATAAAAAA
Length of 3' end seq. 223
Connected seq. ID SSG202P
Connected seq.
>SSG202P.Seq
TTTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTAATGTTTTTTTTTATTATTATTAAT
TATTTATTATTTATTATTTATTATTTATTATTATTTTATAATTATACCATGAATATCGGT
TTTAATATTCTTTTTTAATAATTCTCTACGAATTAAGAGATCTGGAACTTCATTAAAAAA
GTAATTTTCAGCATCAATATCATATTGACGATACATGTAGTCATCGTAATTCTCTTTGAA
ATTTGGTAAACTATAAACGAAAGAAGAGCCAATGTAACCACCAATACCAGCGAATAAACA
AATTGCAAATGTTTTAATTGGTTTAATTGGATTGGTTTTCGCAATACTGTTGCCAATTAA
AGCACCAGCTATACCACCAGTGAAACCTGCTCTCCATATCAATTGCTTTGGAGTGACTGT
ATATCCATATCGATTATAAACGCATTTCATCTTATCATCAGTCGTAAGATCTGCTTTAAG
AATTGGTGGATTTTCAAGTAAATCTACCATTCTCTCTTTTTTCTCCTCCATCATTCTATT
CTTTTCCTCTTGTAATAAAAATCTATTCTTTTTCTCTAATCTCTTTACAGTT--------
--GTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGCTG
CTGTTGCTGTTGCTGTTGCTTCTGTTTTTTTATTTTTTTCATCTATATTTTTATTATCTG
TATTTTTATTATTATTATTTGATGATCTTCTCCATGGAAGCCATGAAGATGATGACGATG
ACGATTCTTTATTCTCTGTCATTATATATATTTATTTATAAAAAA
Length of connected seq. 815
Full length Seq ID -
Full length Seq. -
Length of full length seq. -