SSG195
Library SS
(Link to library)
Clone ID SSG195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSG195Z
(Link to Original site)
Representative DNA sequence
>SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/
XXXXXXXXXXAAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTT
AACGATGAATGTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAA
ATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTT
GCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCA
GCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAAT
GGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTAT
ATTCATATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCT
ATTGCTTAACCATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGT
ATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTT
AAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTC
AATTTTCCTAAATTAAAAA
sequence update 1997.11.12
Translated Amino Acid sequence
---NNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVA
IDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYI
HMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinlyilylfffffffclfffk
kkkkkkqiiikii*inflfnfpklk


Translated Amino Acid sequence (All Frames)
Frame A:
---k*wfk*rrtipirnes*r*m*iprg*cccqdyii*rn*srr*krftkcftfksslsc
y*cfs**fptlhcrcll*tslff*rfrswctccwygy**w*rllhc*k*lgtimgfkwly
sygkk*r*qlwnlnngfisycltificidiyiykyssnlykfvyslsffflffflfilf*
kkkkkktnyn*nnlnkfliqfs*ik


Frame B:
---NNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVA
IDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYI
HMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinlyilylfffffffclfffk
kkkkkkqiiikii*inflfnfpklk


Frame C:
---imv*iaknnthtk*kltmnvnskrvvllprlhhikklkqamktiykmlyf*iqsqll
lmlliivsnftlpvftmnqlvllki*imvylllvwvlimvkiitllkivgdhhgv*mvif
iwqeikitivesqqwlhilllnhfymyryiyi*ilfkpv*iciffifffsfffsvysflk
kkkkknkl*lk*fk*isysifln*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/ 844 0.0
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/ 844 0.0
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/ 844 0.0
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/ 844 0.0
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/ 844 0.0
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/ 837 0.0
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/ 775 0.0
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/ 726 0.0
SSJ288 (SSJ288Q) /CSM/SS/SSJ2-D/SSJ288Q.Seq.d/ 698 0.0
SSE594 (SSE594Q) /CSM/SS/SSE5-D/SSE594Q.Seq.d/ 654 0.0

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 46 7e-07 3
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 58 2e-04 1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 58 2e-04 1
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence. 34 0.001 3
CB272018|CB272018.1 taa29f12.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to TR:O96086 O96086 CATHEPSIN L-LIKE TICK CYSTEINE PROTEINASE B. ;, mRNA sequence. 44 0.002 2
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence. 34 0.003 3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence. 34 0.003 3
AI977044|AI977044.1 EST271638 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAE72 5' end, mRNA sequence. 34 0.003 3
AI977557|AI977557.1 EST272151 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAN82 5' end, mRNA sequence. 34 0.003 3
AI977348|AI977348.1 EST271942 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI24 5' end, mRNA sequence. 34 0.003 3
dna update 2004. 2.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 182 7e-45
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 176 5e-43
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 174 2e-42
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 174 2e-42
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae... 170 3e-41
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50... 169 4e-41
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys... 169 7e-41
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik... 168 1e-40
DQ459303_1(DQ459303|pid:none) Aedes aegypti cathepsin L (CAT-L1)... 168 1e-40
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste... 167 2e-40
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.57 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SSG195 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG195Z
3' end seq.
>SSG195Z.Seq
----------AAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTT
AACGATGAATGTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAA
ATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTT
GCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCA
GCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAAT
GGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTAT
ATTCATATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCT
ATTGCTTAACCATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGT
ATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTT
AAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAATTTCTTATTC
AATTTTCCTAAATTAAAAA
Length of 3' end seq. 609
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -