>SSG189 (SSG189Q) /CSM/SS/SSG1-D/SSG189Q.Seq.d/
CGTTTTAGGTTCAGGTGGTGTAGGTAAATCTGCTTTGACTGTGCAATTTGTTCAAGGTAT
TTTTGTTGAAAAGTACGATCCAACCATCGAAGATTCCTACAGAAAACAAGTCGAAGTTGA
TAGCAATCAATGCATGTTAGAAATTTTAGATACAGCTGGTACTGAACAATTTACTGCAAT
GAGAGATCTTTACATGAAAAATGGTCAAGGTTTTGTTTTAGTATATTCAATCATTTCAAA
CTCCACTTTTAACGAGTTACCAGATCTCCGTGAACAAATTCTCAGAGTTAAGGATTGTGA
AGATGTTCCAATGGTTCTTGTTGGTAACAAATGCGATCTCCACGACCAACGTGTTATTAG
CACAGAACAAGGTGAAGAACTCGCTCGTAAATTTGGTGATTGTTACTTTTTAGAAGCATC
TGCCAAGAATAAAGTTAATGTTGAACAAATTTTCTATAACTTAATCCGTCAAATCAACCG
TAAAAACCCAGTTGGTCCACCAAGCAAAGCTAAATCAAAATGTGCTTTATTGTAAACAAT
CCATCAACTCTCCAACACCCTTCCATACTCACCCACCCATTTCAAATGTAACAATTGAAA
AACAGAA

VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDSNQCMLEILDTAGTEQFTAM
RDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVIS
TEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRKNPVGPPSKAKSKCALL*ti
hqlsntlpyspthfkcnn*kte

Frame A:
rfrfrwcr*icfdcaicsryfc*kvrsnhrrflqktsrs**qsmhvrnfryswy*tiycn
erslhekwsrfcfsifnhfklhf*rvtrsp*tnsqs*gl*rcsngscw*qmrsprptcy*
hrtr*rtrs*iw*lllfrsicqe*s*c*tnfl*lnpsnqp*kpswstkqs*ikmcfivnn
pstlqhpsilthpfqm*qlknr


Frame B:
VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDSNQCMLEILDTAGTEQFTAM
RDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVIS
TEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRKNPVGPPSKAKSKCALL*ti
hqlsntlpyspthfkcnn*kte


Frame C:
f*vqvv*vnll*lcnlfkvfllkstiqpskiptenkskliainac*kf*iqlvlnnllq*
eift*kmvkvlf*yiqsfqtplltsyqisvnkfselrivkmfqwfllvtnaisttnvlla
qnkvknslvnlvivtf*khlpriklmlnkfsit*svkstvktqlvhqaklnqnvlyckqs
insptpfhthppisnvtiekq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG189 (SSG189Q) /CSM/SS/SSG1-D/SSG189Q.Seq.d/                       1203   0.0
SSF811 (SSF811Q) /CSM/SS/SSF8-A/SSF811Q.Seq.d/                       1203   0.0
SSC712 (SSC712Q) /CSM/SS/SSC7-A/SSC712Q.Seq.d/                       1195   0.0
SSF893 (SSF893Q) /CSM/SS/SSF8-D/SSF893Q.Seq.d/                       1183   0.0
SSJ762 (SSJ762Q) /CSM/SS/SSJ7-C/SSJ762Q.Seq.d/                       1134   0.0
SSK314 (SSK314Q) /CSM/SS/SSK3-A/SSK314Q.Seq.d/                       1076   0.0
SSE613 (SSE613Q) /CSM/SS/SSE6-A/SSE613Q.Seq.d/                        910   0.0
SSA793 (SSA793Q) /CSM/SS/SSA7-D/SSA793Q.Seq.d/                        876   0.0
AHH373 (AHH373Q) /CSM/AH/AHH3-D/AHH373Q.Seq.d/                        846   0.0
SSE881 (SSE881Q) /CSM/SS/SSE8-D/SSE881Q.Seq.d/                        769   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X54291|X54291.1 Dictyostelium discoideum rap1 gene for ras-related gene product.  1203  0.0  1
L09750|L09750.1 Dictyostelium discoideum rap1 gene, 3' end exon 1.   900  0.0  2
AJ455048|AJ455048.1 Gallus gallus EST, clone library riken1, clone 4h13r1.    84  2e-30  2
AJ448917|AJ448917.1 Gallus gallus EST, clone library riken1, clone 20d9r1.    84  2e-30  2
BU131523|BU131523.1 603116901F1 CSEQCHL21 Gallus gallus cDNA clone ChEST72b2 5', mRNA sequence.    84  2e-30  2
BU364605|BU364605.1 603790494F1 CSEQCHN72 Gallus gallus cDNA clone ChEST753k23 5', mRNA sequence.    84  3e-30  2
AJ452861|AJ452861.1 Gallus gallus EST, clone library riken1, clone 32g9r1.    84  3e-30  2
BU127754|BU127754.1 603113172F1 CSEQCHL20 Gallus gallus cDNA clone ChEST63o17 5', mRNA sequence.    84  3e-30  2
BU409115|BU409115.1 603159357F1 CSEQRBL03 Gallus gallus cDNA clone ChEST178b16 5', mRNA sequence.    84  3e-30  2
BU133788|BU133788.1 603121707F1 CSEQCHL22 Gallus gallus cDNA clone ChEST84n2 5', mRNA sequence.    84  3e-30  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P18613) RecName: Full=Ras-related protein rapA; AltName: Full=R...   355   6e-97
(Q94694) RecName: Full=Ras-related protein Rap-1; AltName: Full=...   307   2e-82
AF000653_1(AF000653|pid:none) Physarum polycephalum Pprap1 prote...   307   2e-82
BT079893_1(BT079893|pid:none) Esox lucius clone eluc-evq-521-111...   283   3e-75
BT050090_1(BT050090|pid:none) Salmo salar clone ssal-evd-558-184...   283   3e-75
BC095467_1(BC095467|pid:none) Homo sapiens RAP1B, member of RAS ...   282   6e-75
BT078769_1(BT078769|pid:none) Esox lucius clone eluc-evq-539-166...   282   6e-75
CR859758_1(CR859758|pid:none) Pongo abelii mRNA; cDNA DKFZp469L0...   282   6e-75
(Q6TEN1) RecName: Full=Ras-related protein Rap-1b; Flags: Precur...   281   8e-75
BC078173_1(BC078173|pid:none) Homo sapiens RAP1B, member of RAS ...   281   8e-75

 psg: 0.87  gvh: 0.52  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial

>> prediction for SSG189 is cyt

>SSG189E.Seq
CGTTTTAGGTTCAGGTGGTGTAGGTAAATCTGCTTTGACTGTGCAATTTGTTCAAGGTAT
TTTTGTTGAAAAGTACGATCCAACCATCGAAGATTCCTACAGAAAACAAGTCGAAGTTGA
TAGCAATCAATGCATGTTAGAAATTTTAGATACAGCTGGTACTGAACAATTTACTGCAAT
GAGAGATCTTTACATGAAAAATGGTCAAGGTTTTGTTTTAGTATATTCAATCATTTCAAA
CTCCACTTTTAACGAGTTACCAGATCTCCGTGAACAAATTCTCAGAGTTAAGGATTGTGA
AGATGTTCCAATGGTTCTTGTTGGTAACAAATGCGATCTCCACGACCAACGTGTTATTAG
CACAGAACAAGGTGAAGAACTCGCTCGTAAATTTGGTGATTGTTACTTTTTAGAAGCATC
TGCCAAGAATAAAGTTAATGTTGAACAAATTTTCTATAACTTAATCCGTCAAATCAACCG
TAAAAACCCAGTTGGTCCACCAAGCAAAGCTAAATCAAAATGTGCTTTATTGTAAACAAT
CCATCAACTCTCCAACACCCTTCCATACTCACCCACCCATTTCAAATGTAACAATTGAAA
AACAGAA