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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG179
Library SS
(Link to library)
Clone ID SSG179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10256-1
Original site URL
Representative seq. ID SSG179E
(Link to Original site)
Representative DNA sequence 
>SSG179 (SSG179Q) /CSM/SS/SSG1-D/SSG179Q.Seq.d/
AATGGTTACATCTTAACAAAAGATTTATCTAAAGCCTTAACAACTTTGGGTGATAAATTA
ACTGAAGCAGAGTTACAAGAATTGTTATCAATTTCAGAAAACGAACAAAAGCAAGTTAAA
TATGACCTTTTCGTTAATACTCTCTTCAGTAAAAAATAAAGTGATTATTAAATAGTGGAA
AAAAAAAAAAAAAGTATGTTAAAAACGTTTAGGGAGAAGAAATTAAATAAAAAAAAAAAA
AAATATATAAAAAAAACAAAAAAAAAAAAAATCTATATTTAAATAAAACCCTGAATATGT
AAAAAA
sequence update 1997.11.12
Translated Amino Acid sequence 
NGYILTKDLSKALTTLGDKLTEAELQELLSISENEQKQVKYDLFVNTLFSKK*sdy*ive
kkkksmlktfrekklnkkkkkyikktkkkkiyi*ikp*ickk
Translated Amino Acid sequence (All Frames) 
Frame A:
NGYILTKDLSKALTTLGDKLTEAELQELLSISENEQKQVKYDLFVNTLFSKK*sdy*ive
kkkksmlktfrekklnkkkkkyikktkkkkiyi*ikp*ickk


Frame B:
mvts*qkiylkp*qlwvin*lkqsykncyqfqktnksklnmtfslilssvknkviik*wk
kkkkvc*krlgrrn*ikkkkni*kkqkkkksifk*npeyvk


Frame C:
wlhlnkrfi*slnnfg**in*srvtrivinfrkrtkas*i*pfr*yslq*kik*llnsgk
kkkkyvknv*geeik*kkkkiykknkkkknlylnktlnm*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI464 (VSI464Q) /CSM/VS/VSI4-C/VSI464Q.Seq.d/                        353   1e-96
VSI369 (VSI369Q) /CSM/VS/VSI3-C/VSI369Q.Seq.d/                        353   1e-96
SSK379 (SSK379Q) /CSM/SS/SSK3-D/SSK379Q.Seq.d/                        353   1e-96
SSJ450 (SSJ450Q) /CSM/SS/SSJ4-C/SSJ450Q.Seq.d/                        353   1e-96
SSI238 (SSI238Q) /CSM/SS/SSI2-B/SSI238Q.Seq.d/                        353   1e-96
SSG876 (SSG876Q) /CSM/SS/SSG8-D/SSG876Q.Seq.d/                        353   1e-96
SSG179 (SSG179Q) /CSM/SS/SSG1-D/SSG179Q.Seq.d/                        353   1e-96
SSF686 (SSF686Q) /CSM/SS/SSF6-D/SSF686Q.Seq.d/                        353   1e-96
SSC194 (SSC194Q) /CSM/SS/SSC1-D/SSC194Q.Seq.d/                        353   1e-96
SSC193 (SSC193Q) /CSM/SS/SSC1-D/SSC193Q.Seq.d/                        353   1e-96
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   353  e-115  3
M25251|M25251.1 D.discoideum regulatory myosin light chain (rmlc) gene, complete cds.   353  e-107  2
R31663|R31663.1 yh69h01.r1 Soares placenta Nb2HP Homo sapiens cDNA clone IMAGE:135025 5' similar to contains MER22 repetitive element ;, mRNA sequence.    38  0.067  2
AC105497|AC105497.3 Rattus norvegicus clone CH230-214N21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.41  2
AC090707|AC090707.16 Homo sapiens chromosome 11, clone RP11-701I24, complete sequence.    42  0.48  3
AC131144|AC131144.2 Rattus norvegicus clone CH230-96D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  0.95  1
AC053536|AC053536.2 Homo sapiens chromosome 17 clone RP11-750P21, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  0.95  1
BU869148|BU869148.1 M126F02 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    44  0.95  1
U72998|U72998.1 Borrelia burgdorferi plasmid cp32-7, erpL and erpM genes, complete cds.    36  1.3  3
AL831718|AL831718.6 Mouse DNA sequence from clone RP23-146O20 on chromosome X.    38  2.5  3
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P13833) RecName: Full=Myosin regulatory light chain; AltName: F...   102   4e-21
AC116979_41(AC116979|pid:none) Dictyostelium discoideum chromoso...    99   6e-20
AB076705_1(AB076705|pid:none) Physarum polycephalum RMLC mRNA fo...    52   5e-06
AK340619_1(AK340619|pid:none) Acyrthosiphon pisum ACYPI004388 mR...    47   2e-04
BT077781_1(BT077781|pid:none) Lepeophtheirus salmonis Pacific fo...    47   2e-04
EF070474_1(EF070474|pid:none) Maconellicoccus hirsutus clone WHM...    45   6e-04
AB072808_1(AB072808|pid:none) Decapterus tabl mlc1 mRNA for myos...    44   0.002
EU247212_1(EU247212|pid:none) Lycosa singoriensis clone LSsin179...    43   0.003
AK341244_1(AK341244|pid:none) Acyrthosiphon pisum ACYPI008358 mR...    43   0.003
AB072803_1(AB072803|pid:none) Decapterus maruadsi mlc1 mRNA for ...    43   0.004
protein update 2009. 7. 7
PSORT 

 psg: 0.68  gvh: 0.38  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SSG179 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG179E
Full length Seq. 
>SSG179E.Seq
AATGGTTACATCTTAACAAAAGATTTATCTAAAGCCTTAACAACTTTGGGTGATAAATTA
ACTGAAGCAGAGTTACAAGAATTGTTATCAATTTCAGAAAACGAACAAAAGCAAGTTAAA
TATGACCTTTTCGTTAATACTCTCTTCAGTAAAAAATAAAGTGATTATTAAATAGTGGAA
AAAAAAAAAAAAAGTATGTTAAAAACGTTTAGGGAGAAGAAATTAAATAAAAAAAAAAAA
AAATATATAAAAAAAACAAAAAAAAAAAAAATCTATATTTAAATAAAACCCTGAATATGT
AAAAAA
Length of full length seq. 306