SSG167
Library SS
(Link to library)
Clone ID SSG167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13979-1
Original site URL
Representative seq. ID SSG167Z
(Link to Original site)
Representative DNA sequence
>SSG167 (SSG167Q) /CSM/SS/SSG1-C/SSG167Q.Seq.d/
XXXXXXXXXXGTTAATTGCAATTATTCATTCTCTATGTATATCCAATTTAATGGCACCAG
GATTAGGAGAACATTGGAGTCAATTTGTAATGTATGCCTGTTTAATCATATTGCCATCAT
TGTTCTTGTACGTTCCAGACATTGGTATTGTTGTGTCAAGTTCATTCTTTGGTTCATGGA
TCTTTGTGGCTGGCATTGAGCAATTCATTGGCACCGGTTTCCCAAATCCAATGGTCGTAC
TATTCAATAGAGATTGGGATAGACTTGTTGTCATCGAAGAAAGTGCATTCTTAGAGTGTC
TATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAATCAAGACTTTGGTACCAT
CCTCTAATGAAGTTCAAATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTGAAA
AAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAGTTT
TAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTCCAG
TTATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAATGATATGGTCACTCCAA
ATGGTGATGATATTTTACCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAATTAA
TTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTTTTA
AATAAAATAAAATAAAAAAAAAAATAAAATAAACAAAAAAAGTTTGTAAAGGA
sequence update 1997.11.21
Translated Amino Acid sequence
---LIAIIHSLCISNLMAPGLGEHWSQFVMYACLIILPSLFLYVPDIGIVVSSSFFGSWI
FVAGIEQFIGTGFPNPMVVLFNRDWDRLVVIEESAFLECLLVCSIMLTSLLIQIKTLVPS
SNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREVLVDDEVVSKVHNLIFGVGLPV
IKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKLIGKSESSKPLIIN*nyliffk
*nkikkkik*tkkvckg


Translated Amino Acid sequence (All Frames)
Frame A:
---LIAIIHSLCISNLMAPGLGEHWSQFVMYACLIILPSLFLYVPDIGIVVSSSFFGSWI
FVAGIEQFIGTGFPNPMVVLFNRDWDRLVVIEESAFLECLLVCSIMLTSLLIQIKTLVPS
SNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREVLVDDEVVSKVHNLIFGVGLPV
IKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKLIGKSESSKPLIIN*nyliffk
*nkikkkik*tkkvckg


Frame B:
---*lqlfilyvypi*whqd*enigvnl*cmpv*sychhcsctfqtlvllcqvhslvhgs
lwlalsnslapvsqiqwsyysieigidllsskkvhs*svywfvqlcllhy*sksrlwyhp
lmkfkcwisfl*fkrk*lkklslikpllhltskpiyvkf*smmk*fpkftt*slvwvfql
snqls**lammtimiwslqmvmifyhqlltlkpiilkn*lvnqnlqnh*l*ikii*ffln
kik*kkk*nkqkkfvk


Frame C:
---ncnysfsmyiqfngtrirrtlesicnvclfnhiaiivlvrsrhwyccvkfilwfmdl
cgwh*aihwhrfpksngrtiq*rlg*tcchrrkcilrvsiglfnyayfiinpnqdfgtil
**ssnvgyrffnsresn*ksch**nhysi*prnrft*sfsr**ssfqssqlnlwcgsssy
qis*answr**q**yghskw**yfttnf*h*nllf*kinw*irifktinyklklfnff*i
k*nkkknkinkksl*r


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG167 (SSG167Q) /CSM/SS/SSG1-C/SSG167Q.Seq.d/ 1326 0.0
CFI289 (CFI289Q) /CSM/CF/CFI2-D/CFI289Q.Seq.d/ 1310 0.0
AFL469 (AFL469Q) /CSM/AF/AFL4-C/AFL469Q.Seq.d/ 1302 0.0
SSF130 (SSF130Q) /CSM/SS/SSF1-B/SSF130Q.Seq.d/ 1257 0.0
SSM121 (SSM121Q) /CSM/SS/SSM1-A/SSM121Q.Seq.d/ 1118 0.0
SSG432 (SSG432Q) /CSM/SS/SSG4-B/SSG432Q.Seq.d/ 1094 0.0
SLB601 (SLB601Q) /CSM/SL/SLB6-A/SLB601Q.Seq.d/ 1078 0.0
SSE466 (SSE466Q) /CSM/SS/SSE4-C/SSE466Q.Seq.d/ 1051 0.0
SSM439 (SSM439Q) /CSM/SS/SSM4-B/SSM439Q.Seq.d/ 1009 0.0
SLF452 (SLF452Q) /CSM/SL/SLF4-C/SLF452Q.Seq.d/ 981 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC002131|AC002131.1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence. 46 0.64 1
AP006054|AP006054.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03, WORKING DRAFT SEQUENCE, 1 ordered pieces. 36 1.2 4
AC098606|AC098606.6 Rattus norvegicus clone CH230-146J12, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 2.5 1
AC132658|AC132658.4 Rattus norvegicus clone CH230-116J10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 44 2.5 1
AC131247|AC131247.1 Strongylocentrotus purpuratus clone Sp114N15, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces. 44 2.5 1
AL590148|AL590148.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 2.5 1
AL591913|AL591913.14 Mouse DNA sequence from clone RP23-120A4 on chromosome 15. 44 2.5 1
AC090533|AC090533.4 Mus musculus clone RP23-33H13 strain C57BL6/J, WORKING DRAFT SEQUENCE, 45 unordered pieces. 44 2.5 1
AC132788|AC132788.3 Rattus norvegicus clone CH230-309J1, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces. 44 7.7 2
CC656725|CC656725.1 OGUGH32TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0433F16, genomic survey sequence. 36 8.6 2
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR380947_77(CR380947|pid:none) Candida glabrata strain CBS138 ch... 36 1.2
AM263198_2211(AM263198|pid:none) Listeria welshimeri serovar 6b ... 35 3.4
AF103793_3(AF103793|pid:none) Listeria monocytogenes oligopeptid... 35 3.4
AE017262_2204(AE017262|pid:none) Listeria monocytogenes str. 4b ... 35 3.4
AB1349(AB1349) oligopeptide ABC transporter (permease) homolog l... 35 3.4

protein update 2009. 1.30
PSORT

psg: 0.90 gvh: 0.56 alm: 0.24 top: 0.40 tms: 0.33 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: plasma membrane
20.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for SSG167 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG167Z
3' end seq.
>SSG167Z.Seq
----------GTTAATTGCAATTATTCATTCTCTATGTATATCCAATTTAATGGCACCAG
GATTAGGAGAACATTGGAGTCAATTTGTAATGTATGCCTGTTTAATCATATTGCCATCAT
TGTTCTTGTACGTTCCAGACATTGGTATTGTTGTGTCAAGTTCATTCTTTGGTTCATGGA
TCTTTGTGGCTGGCATTGAGCAATTCATTGGCACCGGTTTCCCAAATCCAATGGTCGTAC
TATTCAATAGAGATTGGGATAGACTTGTTGTCATCGAAGAAAGTGCATTCTTAGAGTGTC
TATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAATCAAGACTTTGGTACCAT
CCTCTAATGAAGTTCAAATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTGAAA
AAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAGTTT
TAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTCCAG
TTATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAATGATATGGTCACTCCAA
ATGGTGATGATATTTTACCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAATTAA
TTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTTTTA
AATAAAATAAAATAAAAAAAAAAATAAAATAAACAAAAAAAGTTTGTAAAGGA
Length of 3' end seq. 763
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -