SSG162
Library SS
(Link to library)
Clone ID SSG162
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13914-1
Original site URL
Representative seq. ID SSG162P
(Link to Original site)
Representative DNA sequence
>SSG162 (SSG162Q) /CSM/SS/SSG1-C/SSG162Q.Seq.d/
AAAAAAATGAAATTGTTTAAGATAATATTCTTATTAATTTCAATAATTTATTTAATTGAA
AATAGTTATGCAAATACCTTGTTTAAAGATCAAAATAATGCTGCTATTGAAATTATAAAA
CATATTTATGGTGGAGAAGATATAATTAATCCATGCAATTATAAACCTGATCCAGACACT
CCTCCAATCTTTGTTTGTAGAGCTTCAATTGAAAGTGAATCACTTAGTGAATTAACAGTA
AAATCAATTTCAATCATTGTTTTTAACGAGAATCCAAATAGTCAAATCATAGAAATTTCA
AATGATTTAACCATTTTCAAAGATGTCCAATCCATAGATATTCAAGGTGTATCAATTCCA
TCCGAAACAATCAATAATTTATATAAATTAGAAAGTTTAAAGGATGCGGTATTTTTTAAA
CATTCAGATTTTCCATTAATTGATGATGATTTGATTTTACCAAAAAAAATAGAATCATTA
GGGTTTACATTTTTTGGTGGGTTGGTTGGTAGAGGATTTTTTGAATCTCCAACATTGAGA
GTATTAGAAATTGTAATACCATCTGATGGTTATAGAATCACCACTGATGAAATACCATTC
AATGATCAATTACAATCTTTAAAATTACXXXXXXXXXXCTCTAATGATATTCAATTCTTT
AATCTTCCGTCAATTAATAAAGATATTAAATATTTAACAATTTCTGGAAATGGTTTATAT
TTAGATAAAACTATTGGTTTCACTGATTTATCTAATGCAAATGATGGTTTAGAAATTGCA
ATTGAAGGAAATTGTAAATTTATTACAGATTGTATTGGAAGACCATGTATTAAATTCCCA
TTACAAACAAAATTGAGTTTATTTGATACAGAGGTTGACTTGCAAAAAATTGATTTGTCA
AATATTTCATCGTTATCAGTTCTTGGAAATGCCCAACCACAACCATATCCTTCTGATATT
AATGTCAAGTNGCTTCGAAAAGATCGAAATAAGAGACTCAAGTTTTTATGGAGATATCCC
AAAATCCTACCAAAAAATAGATAGGAACGCTTTGGTATATATTGAATAAGAGGACCATGN
ATAAATGATTTATCCCTTAATATAATTCAATTATAATTGATATTATAATAATGAAAAAAA
TAAGAATCTTAAAAAAAACAAAAAA
sequence update 1998.10. 8
Translated Amino Acid sequence
KKMKLFKIIFLLISIIYLIENSYANTLFKDQNNAAIEIIKHIYGGEDIINPCNYKPDPDT
PPIFVCRASIESESLSELTVKSISIIVFNENPNSQIIEISNDLTIFKDVQSIDIQGVSIP
SETINNLYKLESLKDAVFFKHSDFPLIDDDLILPKKIESLGFTFFGGLVGRGFFESPTLR
VLEIVIPSDGYRITTDEIPFNDQLQSLKL---

---SNDIQFFNLPSINKDIKYLTISGNGLYLDKTIGFTDLSNANDGLEIAIEGNCKFITD
CIGRPCIKFPLQTKLSLFDTEVDLQKIDLSNISSLSVLGNAQPQPYPSDINVKXLRKDRN
KRLKFLWRYPKILPKNR*erfgiy*irgpxindlslniiql*lil***kk*es*kkqk


Translated Amino Acid sequence (All Frames)
Frame A:
KKMKLFKIIFLLISIIYLIENSYANTLFKDQNNAAIEIIKHIYGGEDIINPCNYKPDPDT
PPIFVCRASIESESLSELTVKSISIIVFNENPNSQIIEISNDLTIFKDVQSIDIQGVSIP
SETINNLYKLESLKDAVFFKHSDFPLIDDDLILPKKIESLGFTFFGGLVGRGFFESPTLR
VLEIVIPSDGYRITTDEIPFNDQLQSLKL---

---l**ysil*ssvn**ry*ifnnfwkwfifr*nywfh*fi*ck*wfrncn*rkl*iyyr
lywktmy*ipitnkiefi*yrg*lakn*fvkyfivisswkcptttisf*y*cqvaskrsk
*etqvfmeisqnptkk*igtlwyilnkrtmxk*fip*ynsiiidiiimkkirilkktk

Frame B:
kk*nclr*ysy*fq*fi*lkivmqipclkikimlllkl*nifmveki*lihaiinliqtl
lqslfvelqlkvnhlvn*q*nqfqslfltriqivks*kfqmi*pfskmsnp*ifkvyqfh
pkqsiiyin*kv*rmryflniqifh*lmmi*fyqkk*nh*glhflvgwlvedflnlqh*e
y*kl*yhlmviesplmkyhsminynl*ny---

---SNDIQFFNLPSINKDIKYLTISGNGLYLDKTIGFTDLSNANDGLEIAIEGNCKFITD
CIGRPCIKFPLQTKLSLFDTEVDLQKIDLSNISSLSVLGNAQPQPYPSDINVKXLRKDRN
KRLKFLWRYPKILPKNR*erfgiy*irgpxindlslniiql*lil***kk*es*kkqk

Frame C:
kneiv*dnilinfnnlfn*k*lckylv*rsk*ccy*nyktylwwrryn*smql*t*srhs
snlcl*sfn*k*it**inskinfnhcf*resk*snhrnfk*fnhfqrcpihrysrcinsi
rnnq*fi*irkfkgcgif*tfrfsin***fdftkknriirvyifwwvgw*rif*isnies
irncnti*wl*nhh**ntiq*sitifki---

---lmifnslifrqlikilni*qflemvyi*ikllvsliylmqmmv*klqlkeivnllqi
vledhvlnshykqn*vyliqrltckklicqifhryqflempnhnhillilmssxfekiei
rdssfygdipksyqkidrnalvyie*edhx*miypli*fnyn*yynneknknlkknkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG162 (SSG162Q) /CSM/SS/SSG1-C/SSG162Q.Seq.d/ 2113 0.0
CFC890 (CFC890Q) /CSM/CF/CFC8-D/CFC890Q.Seq.d/ 1061 0.0
CFF718 (CFF718Q) /CSM/CF/CFF7-A/CFF718Q.Seq.d/ 1053 0.0
SFJ841 (SFJ841Q) /CSM/SF/SFJ8-B/SFJ841Q.Seq.d/ 952 0.0
SFI572 (SFI572Q) /CSM/SF/SFI5-C/SFI572Q.Seq.d/ 952 0.0
SFI245 (SFI245Q) /CSM/SF/SFI2-B/SFI245Q.Seq.d/ 942 0.0
SFL344 (SFL344Q) /CSM/SF/SFL3-B/SFL344Q.Seq.d/ 934 0.0
SSD324 (SSD324Q) /CSM/SS/SSD3-A/SSD324Q.Seq.d/ 906 0.0
CHB631 (CHB631Q) /CSM/CH/CHB6-B/CHB631Q.Seq.d/ 900 0.0
CHB381 (CHB381Q) /CSM/CH/CHB3-D/CHB381Q.Seq.d/ 900 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 9e-05 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 0.001 14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.036 12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 32 0.086 13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 0.087 12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 0.13 8
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 38 0.18 12
M94286|M94286.1 Trypanosoma brucei brucei kinetoplast maxicircle genes, putative cds. 38 0.23 4
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence. 38 0.24 4
BX117500|BX117500.1 RZPD Homo sapiens cDNA clone IMAGp998O02403 = IMAGE:207577 5' EST. 48 0.24 1
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ... 42 0.004
CP000724_892(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 35 6.5

protein update 2009. 1.30
PSORT

psg: 0.99 gvh: 0.52 alm: 0.24 top: 0.13 tms: 0.07 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.67 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSG162 is nuc

5' end seq. ID SSG162F
5' end seq.
>SSG162F.Seq
AAAAAAATGAAATTGTTTAAGATAATATTCTTATTAATTTCAATAATTTATTTAATTGAA
AATAGTTATGCAAATACCTTGTTTAAAGATCAAAATAATGCTGCTATTGAAATTATAAAA
CATATTTATGGTGGAGAAGATATAATTAATCCATGCAATTATAAACCTGATCCAGACACT
CCTCCAATCTTTGTTTGTAGAGCTTCAATTGAAAGTGAATCACTTAGTGAATTAACAGTA
AAATCAATTTCAATCATTGTTTTTAACGAGAATCCAAATAGTCAAATCATAGAAATTTCA
AATGATTTAACCATTTTCAAAGATGTCCAATCCATAGATATTCAAGGTGTATCAATTCCA
TCCGAAACAATCAATAATTTATATAAATTAGAAAGTTTAAAGGATGCGGTATTTTTTAAA
CATTCAGATTTTCCATTAATTGATGATGATTTGATTTTACCAAAAAAAATAGAATCATTA
GGGTTTACATTTTTTGGTGGGTTGGTTGGTAGAGGATTTTTTGAATCTCCAACATTGAGA
GTATTAGAAATTGTAATACCATCTGATGGTTATAGAATCACCACTGATGAAATACCATTC
AATGATCAATTACAATCTTTAAAATTAC----------
Length of 5' end seq. 628
3' end seq. ID SSG162Z
3' end seq.
>SSG162Z.Seq
----------CTCTAATGATATTCAATTCTTTAATCTTCCGTCAATTAATAAAGATATTA
AATATTTAACAATTTCTGGAAATGGTTTATATTTAGATAAAACTATTGGTTTCACTGATT
TATCTAATGCAAATGATGGTTTAGAAATTGCAATTGAAGGAAATTGTAAATTTATTACAG
ATTGTATTGGAAGACCATGTATTAAATTCCCATTACAAACAAAATTGAGTTTATTTGATA
CAGAGGTTGACTTGCAAAAAATTGATTTGTCAAATATTTCATCGTTATCAGTTCTTGGAA
ATGCCCAACCACAACCATATCCTTCTGATATTAATGTCAAGTNGCTTCGAAAAGATCGAA
ATAAGAGACTCAAGTTTTTATGGAGATATCCCAAAATCCTACCAAAAAATAGATAGGAAC
GCTTTGGTATATATTGAATAAGAGGACCATGNATAAATGATTTATCCCTTAATATAATTC
AATTATAATTGATATTATAATAATGAAAAAAATAAGAATCTTAAAAAAAACAAAAAA
Length of 3' end seq. 527
Connected seq. ID SSG162P
Connected seq.
>SSG162P.Seq
AAAAAAATGAAATTGTTTAAGATAATATTCTTATTAATTTCAATAATTTATTTAATTGAA
AATAGTTATGCAAATACCTTGTTTAAAGATCAAAATAATGCTGCTATTGAAATTATAAAA
CATATTTATGGTGGAGAAGATATAATTAATCCATGCAATTATAAACCTGATCCAGACACT
CCTCCAATCTTTGTTTGTAGAGCTTCAATTGAAAGTGAATCACTTAGTGAATTAACAGTA
AAATCAATTTCAATCATTGTTTTTAACGAGAATCCAAATAGTCAAATCATAGAAATTTCA
AATGATTTAACCATTTTCAAAGATGTCCAATCCATAGATATTCAAGGTGTATCAATTCCA
TCCGAAACAATCAATAATTTATATAAATTAGAAAGTTTAAAGGATGCGGTATTTTTTAAA
CATTCAGATTTTCCATTAATTGATGATGATTTGATTTTACCAAAAAAAATAGAATCATTA
GGGTTTACATTTTTTGGTGGGTTGGTTGGTAGAGGATTTTTTGAATCTCCAACATTGAGA
GTATTAGAAATTGTAATACCATCTGATGGTTATAGAATCACCACTGATGAAATACCATTC
AATGATCAATTACAATCTTTAAAATTAC----------CTCTAATGATATTCAATTCTTT
AATCTTCCGTCAATTAATAAAGATATTAAATATTTAACAATTTCTGGAAATGGTTTATAT
TTAGATAAAACTATTGGTTTCACTGATTTATCTAATGCAAATGATGGTTTAGAAATTGCA
ATTGAAGGAAATTGTAAATTTATTACAGATTGTATTGGAAGACCATGTATTAAATTCCCA
TTACAAACAAAATTGAGTTTATTTGATACAGAGGTTGACTTGCAAAAAATTGATTTGTCA
AATATTTCATCGTTATCAGTTCTTGGAAATGCCCAACCACAACCATATCCTTCTGATATT
AATGTCAAGTNGCTTCGAAAAGATCGAAATAAGAGACTCAAGTTTTTATGGAGATATCCC
AAAATCCTACCAAAAAATAGATAGGAACGCTTTGGTATATATTGAATAAGAGGACCATGN
ATAAATGATTTATCCCTTAATATAATTCAATTATAATTGATATTATAATAATGAAAAAAA
TAAGAATCTTAAAAAAAACAAAAAA
Length of connected seq. 1155
Full length Seq ID -
Full length Seq. -
Length of full length seq. -