SSG161
Library SS
(Link to library)
Clone ID SSG161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11429-1
Original site URL
Representative seq. ID SSG161E
(Link to Original site)
Representative DNA sequence
>SSG161 (SSG161Q) /CSM/SS/SSG1-C/SSG161Q.Seq.d/
ATTTACAAACTAGTAAGAGTGGTTATACTTTACAATGTTCAACCTATCAAATTGGTGTAC
TCTTACAATTCAATCAATATGAAACTCTCACCTCTGAAGAGATTCAAGAGAGCACCCAAT
TGATTGATTCCGTTCTTAAGGGTACTTTAACCTCTTTGGCAAAATCAAAGATTCTCTTGG
CTGATCCACCTCTCGATGATGAAGAGATCGCTAAAACCACAAAATTCTCTTTGAATAAAC
AATTTAAAAATAAAAAAACAAAGATTTTCATCAATGTTCCAGTGTTAACTCAAGTCAAAG
AAGAAATTGATTCAATCCATAAAACTGTCGAAGAGGATAGAAAACTTCAAATTCAAGCTG
CCATCGTTAGAATCATGAAAATGAGAAAACAATTGGCTCATTCTGGTTTAATGACTGAAG
TAATCTCTCAACTTCAAACTCGTTTCAATCCAAAAGTTAATATCATTAAAAAATGTATTG
ATATTTTAATTGAAAAAGAATATTTAATGAGAGTTGAAGGTAAAAAAGATCATTATTCTT
ATGTTGCTTAAAAAAAAAA
sequence update 1997.11.21
Translated Amino Acid sequence
LQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLAKSKILLA
DPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAA
IVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSY
VA*kk


Translated Amino Acid sequence (All Frames)
Frame A:
iyklvrvvilynvqpiklvysynsinmklsplkrfkrapn*lipflrvl*plwqnqrfsw
lihlsmmkrslkpqnsl*innlkikkqrfssmfqc*lkskkkliqsiklskrienfkfkl
psles*k*ennwlilv**lk*slnfklvsiqklislknvlif*lkkni**elkvkkiiil
mllkkk


Frame B:
ftn**ewlyftmfnlsnwctltiqsi*nshl*rdsrehpid*frs*gyfnlfgkikdslg
*stsr**rdr*nhkilfe*ti*k*knkdfhqcssvnssqrrn*fnp*ncrrg*ktsnssc
hr*nhenektigsfwfnd*snlstsnsfqsks*yh*kmy*yfn*krifnes*r*krslfl
cclkkk


Frame C:
LQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLAKSKILLA
DPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAA
IVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSY
VA*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG161 (SSG161Q) /CSM/SS/SSG1-C/SSG161Q.Seq.d/ 577 e-164
SSF330 (SSF330Q) /CSM/SS/SSF3-B/SSF330Q.Seq.d/ 577 e-164
AFK844 (AFK844Q) /CSM/AF/AFK8-B/AFK844Q.Seq.d/ 492 e-138
VHG592 (VHG592Q) /CSM/VH/VHG5-D/VHG592Q.Seq.d/ 486 e-136
VHG417 (VHG417Q) /CSM/VH/VHG4-A/VHG417Q.Seq.d/ 486 e-136
SFF550 (SFF550Q) /CSM/SF/SFF5-C/SFF550Q.Seq.d/ 486 e-136
CHK727 (CHK727Q) /CSM/CH/CHK7-B/CHK727Q.Seq.d/ 486 e-136
CHH137 (CHH137Q) /CSM/CH/CHH1-B/CHH137Q.Seq.d/ 486 e-136
CHF484 (CHF484Q) /CSM/CH/CHF4-D/CHF484Q.Seq.d/ 486 e-136
CHE552 (CHE552Q) /CSM/CH/CHE5-C/CHE552Q.Seq.d/ 486 e-136

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF020287|AF020287.1 Dictyostelium discoideum CulA (culA) mRNA, complete cds. 577 0.0 2
BI511568|BI511568.1 BB160006A20B06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160006A20B06 5', mRNA sequence. 66 5e-10 2
AA138163|AA138163.1 mq77e08.r1 Stratagene mouse melanoma (#937312) Mus musculus cDNA clone IMAGE:584774 5' similar to TR:G1146334 G1146334 LIN19 PROTEIN. ;, mRNA sequence. 46 5e-06 2
AI882562|AI882562.1 ub97f10.r1 Soares mouse mammary gland NbMMG Mus musculus cDNA clone IMAGE:1396459 5' similar to SW:CUL1_HUMAN Q13616 CULLIN HOMOLOG 1 ;, mRNA sequence. 46 6e-06 2
AU015991|AU015991.1 Mus musculus 2-cell embryo cDNA 3'-end sequence, clone J0719C11. 46 6e-06 2
BE847198|BE847198.1 uw23g08.y1 Soares_thymus_2NbMT Mus musculus cDNA clone IMAGE:3417566 5' similar to SW:CUL1_HUMAN Q13616 CULLIN HOMOLOG 1 ;, mRNA sequence. 46 6e-06 2
BY384235|BY384235.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:I0C0050P05, 3' end partial sequence. 46 6e-06 2
AI019903|AI019903.1 ua93h10.r1 Soares mouse mammary gland NbMMG Mus musculus cDNA clone IMAGE:1365091 5' similar to SW:CUL1_HUMAN Q13616 CULLIN HOMOLOG 1 ;, mRNA sequence. 46 6e-06 2
AA549535|AA549535.1 vk80a06.s1 Knowles Solter mouse 2 cell Mus musculus cDNA clone IMAGE:960946 5' similar to TR:G1146334 G1146334 LIN19 PROTEIN. ;, mRNA sequence. 46 7e-06 2
BG800850|BG800850.1 0053-85 Mouse E14.5 retina lambda ZAP II Library Mus musculus cDNA, mRNA sequence. 46 7e-06 2
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O60999) RecName: Full=Cullin-1; Short=CUL-1; AltName: ... 352 5e-96
(Q13616) RecName: Full=Cullin-1; Short=CUL-1; &(Q5R4G6... 179 6e-44
U58087_1(U58087|pid:none) Human Hs-cul-1 mRNA, complete cds. 179 6e-44
BC066480_1(BC066480|pid:none) Danio rerio cullin 1a, mRNA (cDNA ... 178 1e-43
DQ466084_1(DQ466084|pid:none) Xenopus tropicalis cullin-1 mRNA, ... 176 3e-43
BC097675_1(BC097675|pid:none) Xenopus laevis hypothetical protei... 176 4e-43
(Q24311) RecName: Full=Cullin homolog 1; AltName: Full=Lin-19 ho... 176 4e-43
BC045445_1(BC045445|pid:none) Danio rerio cullin 1a, mRNA (cDNA ... 176 4e-43
BC093534_1(BC093534|pid:none) Xenopus laevis hypothetical protei... 176 4e-43
AF136441_1(AF136441|pid:none) Mus musculus cullin 1 (Cul1) mRNA,... 162 6e-39
protein update 2009. 7. 7
PSORT

psg: 0.84 gvh: 0.50 alm: 0.45 top: 0.13 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for SSG161 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG161E
Full length Seq.
>SSG161E.Seq
ATTTACAAACTAGTAAGAGTGGTTATACTTTACAATGTTCAACCTATCAAATTGGTGTAC
TCTTACAATTCAATCAATATGAAACTCTCACCTCTGAAGAGATTCAAGAGAGCACCCAAT
TGATTGATTCCGTTCTTAAGGGTACTTTAACCTCTTTGGCAAAATCAAAGATTCTCTTGG
CTGATCCACCTCTCGATGATGAAGAGATCGCTAAAACCACAAAATTCTCTTTGAATAAAC
AATTTAAAAATAAAAAAACAAAGATTTTCATCAATGTTCCAGTGTTAACTCAAGTCAAAG
AAGAAATTGATTCAATCCATAAAACTGTCGAAGAGGATAGAAAACTTCAAATTCAAGCTG
CCATCGTTAGAATCATGAAAATGAGAAAACAATTGGCTCATTCTGGTTTAATGACTGAAG
TAATCTCTCAACTTCAAACTCGTTTCAATCCAAAAGTTAATATCATTAAAAAATGTATTG
ATATTTTAATTGAAAAAGAATATTTAATGAGAGTTGAAGGTAAAAAAGATCATTATTCTT
ATGTTGCTTAAAAAAAAAA
Length of full length seq. 559