SSG151
Library SS
(Link to library)
Clone ID SSG151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16196-1
Original site URL
Representative seq. ID SSG151Z
(Link to Original site)
Representative DNA sequence
>SSG151 (SSG151Q) /CSM/SS/SSG1-C/SSG151Q.Seq.d/
XXXXXXXXXXGATCAAAACACGGTCGTGGTAGTGTTCCATACATCGGATGCCCCAACTGT
GCTAGATGTGTCCCAAAAGACAAAGCTGTCAAGGGATTCTACATTAGACCAATCGTCGAA
AATGCTGCCGTTAAGGATATTTCAGATCAAGGTGTTTTCAACGTCAAAGGTTACAAATTC
CCAAGAACCTACGTTAAATCCCAATACTGTATTTCATGTGCTATCCACAGTCACATCGTC
CGTGTTCGTTCAGTTGCCGACAGAAAAATCAGAACCAGACCATCCCGTCCAGGTGTCAAG
AAACCAACTGCTGCCAAATAAAATGATTAACAATAAATTTCTTTTGTTATCTCTTTAAAA
AAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.11.21
Translated Amino Acid sequence
---QNTVVVVFHTSDAPTVLDVSQKTKLSRDSTLDQSSKMLPLRIFQIKVFSTSKVTNSQ
EPTLNPNTVFHVLSTVTSSVFVQLPTEKSEPDHPVQVSRNQLLPNKMINNKFLLLSL*kk
fkkkkkkkkkkknkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---iktrsw*csihrmpqlc*mcpkrqscqgilh*tnrrkccr*gyfrsrcfqrqrlqip
knlr*ipilyfmcypqshrpcsfscrqknqnqtipsrcqetnccqik*ltinffcylfkk
nlkkkkkkkkkkktkkkkkkkkkkkkkk


Frame B:
---skhgrgsvpyigcpncarcvpkdkavkgfyirpivenaavkdisdqgvfnvkgykfp
rtyvksqyciscaihshivrvrsvadrkirtrpsrpgvkkptaak*nd*q*isfvislkk
i*kkkkkkkkkkkqkkkkkkkkkkkkkk


Frame C:
---QNTVVVVFHTSDAPTVLDVSQKTKLSRDSTLDQSSKMLPLRIFQIKVFSTSKVTNSQ
EPTLNPNTVFHVLSTVTSSVFVQLPTEKSEPDHPVQVSRNQLLPNKMINNKFLLLSL*kk
fkkkkkkkkkkknkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG151 (SSG151Q) /CSM/SS/SSG1-C/SSG151Q.Seq.d/ 686 0.0
VSJ770 (VSJ770Q) /CSM/VS/VSJ7-C/VSJ770Q.Seq.d/ 662 0.0
VSJ518 (VSJ518Q) /CSM/VS/VSJ5-A/VSJ518Q.Seq.d/ 662 0.0
VSE310 (VSE310Q) /CSM/VS/VSE3-A/VSE310Q.Seq.d/ 662 0.0
VHB888 (VHB888Q) /CSM/VH/VHB8-D/VHB888Q.Seq.d/ 662 0.0
VFD371 (VFD371Q) /CSM/VF/VFD3-C/VFD371Q.Seq.d/ 662 0.0
SSI121 (SSI121Q) /CSM/SS/SSI1-A/SSI121Q.Seq.d/ 662 0.0
FC-AM16 (FC-AM16Q) /CSM/FC/FC-AM/FC-AM16Q.Seq.d/ 662 0.0
VFA569 (VFA569Q) /CSM/VF/VFA5-C/VFA569Q.Seq.d/ 654 0.0
SSM882 (SSM882Q) /CSM/SS/SSM8-D/SSM882Q.Seq.d/ 644 0.0

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ475194|BQ475194.1 cicindela3a07.b Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela3a07 5', mRNA sequence. 52 0.006 1
BQ475449|BQ475449.1 cicindela3a07.g Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela3a07 3', mRNA sequence. 52 0.006 1
BF268648|BF268648.1 GA__Eb0002H01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002H01f, mRNA sequence. 46 0.36 1
AJ513597|AJ513597.1 Gossypium hirsutum EST, clone suo25h09r3. 46 0.36 1
AJ513558|AJ513558.1 Gossypium hirsutum EST, clone suo25e05r3. 46 0.36 1
AJ513189|AJ513189.1 Gossypium hirsutum EST, clone su187d03r3. 46 0.36 1
BH424892|BH424892.1 BOGQH02TF BOGQ Brassica oleracea genomic clone BOGQH02, DNA sequence. 46 0.36 1
BH157635|BH157635.1 ENTRQ91TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.84 3
BH162401|BH162401.1 ENTRP39TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.88 3
AZ667776|AZ667776.1 ENTLT79TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.89 3
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54TL8) RecName: Full=40S ribosomal protein S26; 205 3e-52
DQ413194_1(DQ413194|pid:none) Acyrthosiphon pisum isolate WHAP00... 119 4e-26
AY099673_1(AY099673|pid:none) Arabidopsis thaliana 40S ribosomal... 116 2e-25
GM963134_1(GM963134|pid:none) Sequence 10088 from Patent WO20081... 115 5e-25
GM960533_1(GM960533|pid:none) Sequence 7487 from Patent WO200814... 115 6e-25
GM960535_1(GM960535|pid:none) Sequence 7489 from Patent WO200814... 115 6e-25
GM963132_1(GM963132|pid:none) Sequence 10086 from Patent WO20081... 115 6e-25
GM960537_1(GM960537|pid:none) Sequence 7491 from Patent WO200814... 115 6e-25
GM960545_1(GM960545|pid:none) Sequence 7499 from Patent WO200814... 113 2e-24
(P49206) RecName: Full=40S ribosomal protein S26-1; &AC002336_6... 113 2e-24
protein update 2009. 6.11
PSORT

psg: 0.89 gvh: 0.38 alm: 0.39 top: 0.43 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSG151 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG151Z
3' end seq.
>SSG151Z.Seq
----------GATCAAAACACGGTCGTGGTAGTGTTCCATACATCGGATGCCCCAACTGT
GCTAGATGTGTCCCAAAAGACAAAGCTGTCAAGGGATTCTACATTAGACCAATCGTCGAA
AATGCTGCCGTTAAGGATATTTCAGATCAAGGTGTTTTCAACGTCAAAGGTTACAAATTC
CCAAGAACCTACGTTAAATCCCAATACTGTATTTCATGTGCTATCCACAGTCACATCGTC
CGTGTTCGTTCAGTTGCCGACAGAAAAATCAGAACCAGACCATCCCGTCCAGGTGTCAAG
AAACCAACTGCTGCCAAATAAAATGATTAACAATAAATTTCTTTTGTTATCTCTTTAAAA
AAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 437
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -