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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG141
Library SS
(Link to library)
Clone ID SSG141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15360-1|Contig-U16512-1
Original site URL
Representative seq. ID SSG141P
(Link to Original site)
Representative DNA sequence 
>SSG141 (SSG141Q) /CSM/SS/SSG1-B/SSG141Q.Seq.d/
CAACTACAACAACAACTACAGCAACAACAACAGCAGCAACAAAATAATACAACAACAAGA
CCAACAACAACAACAAAATTATGGTGGACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAAAAACAAGAACAACAACAAAATGACGAACAGCAACAACATAATTATGG
TGAACAACATCAACATCAACAACAACAACAACAACAACAACAACAANACTACGGTGAACA
ACAACAANATTACCATCAACAACAACAACAACAAAATTTTAGTGAACAACAACAAAATGA
TGATCAACAACAACAACAACATTATAGTGAACAACAXXXXXXXXXXTGTAAAGGTTTGCT
CATTCTTAATTCACTTCCCAAAGCCATTCGTACCTCAAATCGATGAGGATGATGAAGATG
CTCAACCTCCACCACCTCAAAATCCTGAAGATTTAAAACCAAGAATTGAAATGATAAATG
CTAAAGTAGTTAATGGTTTCAATAGAGTTATGAAAGATACTAAAAATTTATTATTTTTAA
GTTCTTCAAAATATTTAGATTTAAAAAGTATTCATTCAAAACCAATTATGACAAATGATT
CACAAGAATTTGAAGAAGTTGGTTGTTTTTCTGCAATCATGGTATTAAATGATAAAAATA
ATAAAAAATAATAATTTAAAAAATAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.10. 8
Translated Amino Acid sequence 
NYNNNYSNNNSSNKIIQQQDQQQQQNYGGQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQKQEQQQNDEQQQHNYGEQHQHQQQQQQQQQQXYGEQQQXYHQQQQQQNFSEQQQND
DQQQQQHYSEQ---

---VKVCSFLIHFPKPFVPQIDEDDEDAQPPPPQNPEDLKPRIEMINAKVVNGFNRVMKD
TKNLLFLSSSKYLDLKSIHSKPIMTNDSQEFEEVGCFSAIMVLNDKNNKK**fkk**fkk
kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qlqqqlqqqqqqqqnntttrpttttklwwttttttttttttttttttttttttttttttt
ttttktrtttk*rtatt*lw*ttststttttttttxlr*tttxlpstttttkf**tttk*
*stttttl**tt---

---ckgllilnslpkairtsnr*g**rcststtsks*rfktkn*ndkc*ss*wfq*syer
y*kfiifkffkifrfkkysfktnydk*ftri*rswlffcnhgik**k**kiii*kiii*k
kkkkkkk

Frame B:
NYNNNYSNNNSSNKIIQQQDQQQQQNYGGQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQKQEQQQNDEQQQHNYGEQHQHQQQQQQQQQQXYGEQQQXYHQQQQQQNFSEQQQND
DQQQQQHYSEQ---

---VKVCSFLIHFPKPFVPQIDEDDEDAQPPPPQNPEDLKPRIEMINAKVVNGFNRVMKD
TKNLLFLSSSKYLDLKSIHSKPIMTNDSQEFEEVGCFSAIMVLNDKNNKK**fkk**fkk
kkkkkkk

Frame C:
ttttttatttaatk*ynnktnnnnkimvdnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnknknnnkmtnsnniimvnnininnnnnnnnnxttvnnnxitinnnnnkilvnnnkmm
innnnniivnn---

---*rfahs*ftsqshsylksmrmmkmlnlhhlkilki*nqelk**mlk*lmvsiel*ki
lkiyyf*vlqni*i*kvfiqnql*qmihknlkklvvflqswy*mikiiknnnlknnnlkk
kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG141 (SSG141Q) /CSM/SS/SSG1-B/SSG141Q.Seq.d/                        593   e-168
CHG389 (CHG389Q) /CSM/CH/CHG3-D/CHG389Q.Seq.d/                        585   e-166
VFI605 (VFI605Q) /CSM/VF/VFI6-A/VFI605Q.Seq.d/                        535   e-151
SFC864 (SFC864Q) /CSM/SF/SFC8-C/SFC864Q.Seq.d/                        505   e-142
CHQ224 (CHQ224Q) /CSM/CH/CHQ2-A/CHQ224Q.Seq.d/                        406   e-112
SLH556 (SLH556Q) /CSM/SL/SLH5-C/SLH556Q.Seq.d/                         40   0.050
CFH348 (CFH348Q) /CSM/CF/CFH3-B/CFH348Q.Seq.d/                         40   0.050
VHP325 (VHP325Q) /CSM/VH/VHP3-B/VHP325Q.Seq.d/                         38   0.20
VHO501 (VHO501Q) /CSM/VH/VHO5-A/VHO501Q.Seq.d/                         38   0.20
SLE668 (SLE668Q) /CSM/SL/SLE6-C/SLE668Q.Seq.d/                         38   0.20
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    40   0.001  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    30   0.006  14
CQ574448|CQ574448.1 Sequence 2206 from Patent WO0171042.           44   0.13   2
AC127023|AC127023.17 Pan troglodytes clone rp43-118p7, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36   0.24   5
AC087485|AC087485.6 Homo sapiens chromosome 15, clone RP11-570N16, complete sequence.    46   0.50   4
AC096964|AC096964.7 Rattus norvegicus clone CH230-202E24, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.75   1
AC146666|AC146666.1 Homo sapiens chromosome 15 clone RP11-857N1 map 15, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.75   1
AL290871|AL290871.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  110K04 of library G from Tetraodon nigroviridis.    46   0.75   1
AL291174|AL291174.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  110J04 of library G from Tetraodon nigroviridis.    46   0.75   1
AC136896|AC136896.6 Homo sapiens chromosome 15, clone RP11-860O1, complete sequence.    46   0.75   1
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_77(AC116956|pid:none) Dictyostelium discoideum chromoso...    33   10.0
protein update 2009. 1.30
PSORT 

 psg: 0.57  gvh: 0.07  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSG141 is nuc
5' end seq. ID SSG141F
5' end seq. 
>SSG141F.Seq
CAACTACAACAACAACTACAGCAACAACAACAGCAGCAACAAAATAATACAACAACAAGA
CCAACAACAACAACAAAATTATGGTGGACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAAAAACAAGAACAACAACAAAATGACGAACAGCAACAACATAATTATGG
TGAACAACATCAACATCAACAACAACAACAACAACAACAACAACAANACTACGGTGAACA
ACAACAANATTACCATCAACAACAACAACAACAAAATTTTAGTGAACAACAACAAAATGA
TGATCAACAACAACAACAACATTATAGTGAACAACA----------
Length of 5' end seq. 396
3' end seq. ID SSG141Z
3' end seq. 
>SSG141Z.Seq
----------TGTAAAGGTTTGCTCATTCTTAATTCACTTCCCAAAGCCATTCGTACCTC
AAATCGATGAGGATGATGAAGATGCTCAACCTCCACCACCTCAAAATCCTGAAGATTTAA
AACCAAGAATTGAAATGATAAATGCTAAAGTAGTTAATGGTTTCAATAGAGTTATGAAAG
ATACTAAAAATTTATTATTTTTAAGTTCTTCAAAATATTTAGATTTAAAAAGTATTCATT
CAAAACCAATTATGACAAATGATTCACAAGAATTTGAAGAAGTTGGTTGTTTTTCTGCAA
TCATGGTATTAAATGATAAAAATAATAAAAAATAATAATTTAAAAAATAATAATTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 374
Connected seq. ID SSG141P
Connected seq. 
>SSG141P.Seq
CAACTACAACAACAACTACAGCAACAACAACAGCAGCAACAAAATAATACAACAACAAGA
CCAACAACAACAACAAAATTATGGTGGACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAAAAACAAGAACAACAACAAAATGACGAACAGCAACAACATAATTATGG
TGAACAACATCAACATCAACAACAACAACAACAACAACAACAACAANACTACGGTGAACA
ACAACAANATTACCATCAACAACAACAACAACAAAATTTTAGTGAACAACAACAAAATGA
TGATCAACAACAACAACAACATTATAGTGAACAACA----------TGTAAAGGTTTGCT
CATTCTTAATTCACTTCCCAAAGCCATTCGTACCTCAAATCGATGAGGATGATGAAGATG
CTCAACCTCCACCACCTCAAAATCCTGAAGATTTAAAACCAAGAATTGAAATGATAAATG
CTAAAGTAGTTAATGGTTTCAATAGAGTTATGAAAGATACTAAAAATTTATTATTTTTAA
GTTCTTCAAAATATTTAGATTTAAAAAGTATTCATTCAAAACCAATTATGACAAATGATT
CACAAGAATTTGAAGAAGTTGGTTGTTTTTCTGCAATCATGGTATTAAATGATAAAAATA
ATAAAAAATAATAATTTAAAAAATAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -