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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG138
Library SS
(Link to library)
Clone ID SSG138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSG138E
(Link to Original site)
Representative DNA sequence 
>SSG138 (SSG138Q) /CSM/SS/SSG1-B/SSG138Q.Seq.d/
ATTACATTTACTCAAATTTAATTACAGTACTACTAGAAACAATATAACCAAATGATAAAG
TTTGACCAGGACTAATTTGGTTATTCCAACTTGTAAATGAAACAATATTTGAACTAACTA
AATTCAATTCCCAAGATGATGATGGAGTTTTATCAATTGCAAATCTTGGAATAGGAATTG
GACTACTTGATGGATTGGTTAATGTACAATCAACCAAAGTATTTGTATTTGTACCATCAA
ACCAAGTTTGTCTAATAGTTTGTTTAATAACTGCTTTAACATTTGATGATCCAGTTGTAC
TTGATCCACCAGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGGTTTAGTTGTAGTTG
TTGATGAACCTGATCCACCAGTGGTTGTTGGTTTACTAGTTGGAATAACCAAATTAGTCC
TGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCA
AATTTAAAAAAA
sequence update 1997.11.14
Translated Amino Acid sequence 
yiysnlitvlleti*pndkv*PGLIWLFQLVNETIFELTKFNSQDDDGVLSIANLGIGIG
LLDGLVNVQSTKVFVFVPSNQVCLIVCLITALTFDDPVVLDPPVVVVVVVVVVDGLVVVV
DEPDPPVVVGLLVGITKLVLVKLYHLVILFLVVL*lhllkfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
itftqi*lqyy*kqynqmikfdqd*fgysnl*mkqyln*lnsipkmmmefyqlqile*el
dylmdwlmynqpkylylyhqtkfv**fv**ll*hlmiqlylihqwlllllllllmv*l*l
lmnlihqwllvy*le*pn*swsnfiiwlycf**ycnyiysnlkk


Frame B:
lhllkfnysttrnnitk**sltrtnlviptck*nni*tn*iqfpr**wsfinckswnrnw
tt*wig*ctinqsicictikpslsnslfnncfni**ssct*stsgcccccccc*wfscsc
**t*stsgcwftswnnqispgqtlsfgyivssstvitftqi*k


Frame C:
yiysnlitvlleti*pndkv*PGLIWLFQLVNETIFELTKFNSQDDDGVLSIANLGIGIG
LLDGLVNVQSTKVFVFVPSNQVCLIVCLITALTFDDPVVLDPPVVVVVVVVVVDGLVVVV
DEPDPPVVVGLLVGITKLVLVKLYHLVILFLVVL*lhllkfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG138 (SSG138Q) /CSM/SS/SSG1-B/SSG138Q.Seq.d/                        622   e-177
SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        589   e-167
SSM447 (SSM447Q) /CSM/SS/SSM4-B/SSM447Q.Seq.d/                        589   e-167
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        589   e-167
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        589   e-167
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        589   e-167
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        589   e-167
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        589   e-167
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        589   e-167
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        589   e-167
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX511160|BX511160.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-238J22.    36  1.5  9
AC145325|AC145325.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    38  3.7  3
BU092482|BU092482.1 946130H09.y2 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    42  6.4  1
CD397851|CD397851.1 Gm_ck1881 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42  6.4  1
CD442279|CD442279.1 EL01N0407D04.b Endosperm_4 Zea mays cDNA, mRNA sequence.    42  6.4  1
CD415067|CD415067.1 Gm_ck5103 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42  6.4  1
CA830689|CA830689.1 1117010C09.y1 1117 - Unigene V from Maize Genome Project Zea mays cDNA, mRNA sequence.    42  6.4  1
CD408286|CD408286.1 Gm_ck34391 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42  6.4  1
BM652138|BM652138.1 17000687375148 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449632164 5', mRNA sequence.    42  6.4  1
CD392624|CD392624.1 Gm_ck11824 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42  6.4  1
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   2e-05
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    43   0.003
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    42   0.010
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.11
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.11
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin...    38   0.15
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.25
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.33
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel...    36   0.43
CP000282_2307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   0.43
protein update 2009. 7. 7
PSORT 

 psg: 0.92  gvh: 0.46  alm: 0.06  top: 0.80  tms: 0.27  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 16.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG138 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG138E
Full length Seq. 
>SSG138E.Seq
ATTACATTTACTCAAATTTAATTACAGTACTACTAGAAACAATATAACCAAATGATAAAG
TTTGACCAGGACTAATTTGGTTATTCCAACTTGTAAATGAAACAATATTTGAACTAACTA
AATTCAATTCCCAAGATGATGATGGAGTTTTATCAATTGCAAATCTTGGAATAGGAATTG
GACTACTTGATGGATTGGTTAATGTACAATCAACCAAAGTATTTGTATTTGTACCATCAA
ACCAAGTTTGTCTAATAGTTTGTTTAATAACTGCTTTAACATTTGATGATCCAGTTGTAC
TTGATCCACCAGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGGTTTAGTTGTAGTTG
TTGATGAACCTGATCCACCAGTGGTTGTTGGTTTACTAGTTGGAATAACCAAATTAGTCC
TGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCA
AATTTAAAAAAA
Length of full length seq. 492