>SSG132 (SSG132Q) /CSM/SS/SSG1-B/SSG132Q.Seq.d/
XXXXXXXXXXTAAAGAAATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTT
TAAATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCG
GTGTTTACTATGAACCCGCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTG
GTATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCAACAT
GGGGTTTAAATGGTTATATTCATTTGGCAAGAAATAAAGATAACAATTGTGGAATCTCAA
CAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTGTAGATATATATATATATAA
ATACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTT
TCTGTTTATTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---KEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVG
MGTDNGEDYYIVKNSWGPTWGLNGYIHLARNKDNNCGISTMASYPIA*pflyv*iyiyin
tlqtcinlyilylfffffffclfffkkkkkkkkkkkk

Frame A:
---KEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVG
MGTDNGEDYYIVKNSWGPTWGLNGYIHLARNKDNNCGISTMASYPIA*pflyv*iyiyin
tlqtcinlyilylfffffffclfffkkkkkkkkkkkk


Frame B:
---kklkqamktiykmlyf*iqsqlllmlliivsnftlpvftmnplvllki*imvylllv
wvlimvkiitllkivgdqhgv*mvifiwqeikitivesqqwlhilllnhfymcryiyi*i
lfkpv*iciffifffsfffsvysflkkkkkkkkkkkk


Frame C:
---rn*srr*krftkcftfksslscy*cfs**fptlhcrcll*trlff*rfrswctccwy
gy**w*rllhc*k*lgtnmgfkwlysfgkk*r*qlwnlnngfisycltificvdiyiyky
ssnlykfvyslsffflffflfilf*kkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG132 (SSG132Q) /CSM/SS/SSG1-B/SSG132Q.Seq.d/                        662   0.0
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        630   e-180
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        630   e-180
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        630   e-180
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        630   e-180
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        630   e-180
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        630   e-180
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        630   e-180
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/                        630   e-180
SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/                        626   e-179

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    46   3e-05  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    58   1e-04  1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    58   1e-04  1
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence.    34   2e-04  3
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence.    34   3e-04  3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence.    34   4e-04  3
AI977044|AI977044.1 EST271638 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAE72 5' end, mRNA sequence.    34   4e-04  3
AI977557|AI977557.1 EST272151 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAN82 5' end, mRNA sequence.    34   4e-04  3
AI977348|AI977348.1 EST271942 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI24 5' end, mRNA sequence.    34   4e-04  3
BF936172|BF936172.1 EST459136 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFBL67 3' end, mRNA sequence.    34   5e-04  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   158   6e-38
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   150   2e-35
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   146   2e-34
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   145   6e-34
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   144   7e-34
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   144   7e-34
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...   144   7e-34
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   144   7e-34
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   144   1e-33
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   144   1e-33

 psg: 0.75  gvh: 0.57  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSG132 is cyt

>SSG132Z.Seq
----------TAAAGAAATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTT
TAAATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCG
GTGTTTACTATGAACCCGCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTG
GTATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCAACAT
GGGGTTTAAATGGTTATATTCATTTGGCAAGAAATAAAGATAACAATTGTGGAATCTCAA
CAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTGTAGATATATATATATATAA
ATACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTT
TCTGTTTATTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA