>SSG117 (SSG117Q) /CSM/SS/SSG1-A/SSG117Q.Seq.d/
XXXXXXXXXXTCGGCAACCCGAAATTACTATATGCTGCAATTGACGCAGATGCGAATAGT
TGTGTGTTCAATAGCGACCGTTTGAAATTAATAAATTCAGGTATAATGCTATTGTCACCA
TCGATTGATGTTTATAATCTGTTGATTGATGGAATGGTGGTAGTTAGTAAACTACCAAAC
CAGAGCACTGTAAACGACCAAGATGTGATCAATACCACTTTGCCACACTGGAGATCCTTG
TCATATCCAGAGTATGGCGTTCAAATAACACATTGTGAATNCACGATTGTNNNGAGACTT
TGGAATTTTACAAATACTTATTTCTTACATTTCACTGCCGGTCTAAAAGAATTACCAAAA
CCATGGTCACTACTAAAGAAATCTCAAAATGAAGCTAAAGATATCTTTAAACAAATGCCA
ACTTGTATTGAACAAATTTATTTAAATTGGATTAATACATATAAAGAAGCTTTAGATTTT
ATTGAAAATAAATTAAATTTAGTTAATTTAGTAAAATAAAGAAATTTAAAATGAAAATAA
AAATAAAAATAAAAATAATATTTTAAACTA

---GNPKLLYAAIDADANSCVFNSDRLKLINSGIMLLSPSIDVYNLLIDGMVVVSKLPNQ
STVNDQDVINTTLPHWRSLSYPEYGVQITHCEXTIVXRLWNFTNTYFLHFTAGLKELPKP
WSLLKKSQNEAKDIFKQMPTCIEQIYLNWINTYKEALDFIENKLNLVNLVK*rnlk*k*k
*k*k*yfkl

Frame A:
---rqpeiticcn*rrce*lcvq*rpfeinkfrynaivtid*cl*svd*wnggs**ttkp
ehckrprcdqyhfatleilvisrvwrsnntl*xhdcxetlefykylfltfhcrskritkt
mvttkeisk*s*ryl*tnanly*tnlfkld*yi*rsfrfy*k*ikfs*fskikkfkmkik
ikikiif*t


Frame B:
---GNPKLLYAAIDADANSCVFNSDRLKLINSGIMLLSPSIDVYNLLIDGMVVVSKLPNQ
STVNDQDVINTTLPHWRSLSYPEYGVQITHCEXTIVXRLWNFTNTYFLHFTAGLKELPKP
WSLLKKSQNEAKDIFKQMPTCIEQIYLNWINTYKEALDFIENKLNLVNLVK*rnlk*k*k
*k*k*yfkl


Frame C:
---atrnyymlqltqmrivvcsiatv*n**iqv*cychhrlmfiic*lmeww*lvnyqtr
al*ttkm*siplchtgdpchiqsmafk*hivnxrlxxdfgilqilisyislpv*knyqnh
ghy*rnlkmklkislnkcqlvlnkfi*iglihikkl*illkin*i*li**nkei*nenkn
knknniln

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG117 (SSG117Q) /CSM/SS/SSG1-A/SSG117Q.Seq.d/                        912   0.0
SSG110 (SSG110Q) /CSM/SS/SSG1-A/SSG110Q.Seq.d/                        888   0.0
SFC571 (SFC571Q) /CSM/SF/SFC5-C/SFC571Q.Seq.d/                        888   0.0
AFK382 (AFK382Q) /CSM/AF/AFK3-D/AFK382Q.Seq.d/                        872   0.0
VHM766 (VHM766Q) /CSM/VH/VHM7-C/VHM766Q.Seq.d/                         36   0.56
VHK802 (VHK802Q) /CSM/VH/VHK8-A/VHK802Q.Seq.d/                         36   0.56
VHJ894 (VHJ894Q) /CSM/VH/VHJ8-D/VHJ894Q.Seq.d/                         36   0.56
VHH654 (VHH654Q) /CSM/VH/VHH6-C/VHH654Q.Seq.d/                         36   0.56
VHC881 (VHC881Q) /CSM/VH/VHC8-D/VHC881Q.Seq.d/                         36   0.56
VHO201 (VHO201Q) /CSM/VH/VHO2-A/VHO201Q.Seq.d/                         34   2.2

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    38   0.031  10
AP003360|AP003360.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 3/9.    36   0.10   9
AC025117|AC025117.6 Mus musculus chromosome 6 clone RP23-67M2 map 6, WORKING DRAFT SEQUENCE, 28 unordered pieces.    34   0.28   2
AC123549|AC123549.5 Mus musculus BAC clone RP24-91K17 from chromosome 6, complete sequence.    34   0.29   2
AC145079|AC145079.3 Mus musculus clone RP23-219G12, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46   0.54   1
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   0.63   8
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome.    34   1.0    9
AL627428|AL627428.23 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-386C14.    44   2.1    1
AL731866|AL731866.8 Mouse DNA sequence from clone RP23-37F22 on chromosome 11.    44   2.1    1
AL353688|AL353688.7 Human DNA sequence from clone RP11-275O3 on chromosome 13.    44   2.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ919280_1(FJ919280|pid:none) Ustilago maydis strain L8 galactin...    36   0.82
AJ720384_1(AJ720384|pid:none) Gallus gallus mRNA for hypothetica...    34   2.4
BC124337_1(BC124337|pid:none) Danio rerio HECT domain containing...    33   5.3
AY814279_1(AY814279|pid:none) Schistosoma japonicum SJCHGC08979 ...    33   5.3
AE001437_200(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    33   6.9
(Q9R062) RecName: Full=Glycogenin-1;          EC=2.4.1.186;  &AF...    32   9.0

 psg: 0.73  gvh: 0.43  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: vacuolar

>> prediction for SSG117 is nuc

>SSG117Z.Seq
----------TCGGCAACCCGAAATTACTATATGCTGCAATTGACGCAGATGCGAATAGT
TGTGTGTTCAATAGCGACCGTTTGAAATTAATAAATTCAGGTATAATGCTATTGTCACCA
TCGATTGATGTTTATAATCTGTTGATTGATGGAATGGTGGTAGTTAGTAAACTACCAAAC
CAGAGCACTGTAAACGACCAAGATGTGATCAATACCACTTTGCCACACTGGAGATCCTTG
TCATATCCAGAGTATGGCGTTCAAATAACACATTGTGAATNCACGATTGTNNNGAGACTT
TGGAATTTTACAAATACTTATTTCTTACATTTCACTGCCGGTCTAAAAGAATTACCAAAA
CCATGGTCACTACTAAAGAAATCTCAAAATGAAGCTAAAGATATCTTTAAACAAATGCCA
ACTTGTATTGAACAAATTTATTTAAATTGGATTAATACATATAAAGAAGCTTTAGATTTT
ATTGAAAATAAATTAAATTTAGTTAATTTAGTAAAATAAAGAAATTTAAAATGAAAATAA
AAATAAAAATAAAAATAATATTTTAAACTA