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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG107
Library SS
(Link to library)
Clone ID SSG107
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00805-1|Contig-U15580-1
Original site URL
Representative seq. ID SSG107P
(Link to Original site)
Representative DNA sequence 
>SSG107 (SSG107Q) /CSM/SS/SSG1-A/SSG107Q.Seq.d/
TGTGTGTTTAAAATTTTTTTTTCCAGATCTTAATATTTATGAAAATATAAAAATAACAAA
ACAGTAATAAGAATATAAATAAATAAAAAAATAGAAAAAAAAATAAAAAATGGCAGGTGA
TGATGATAGAGATTCAATTCCAATGGAACATTATGACCAACAAGAATTACAACCACCACA
ACAAGAATTACAACAACCACCACAACAACAACAACAACAACAACAAGAATTACAACAACA
ACAACAACAACAACAACAAATATATCCAAGTATAAATGATTTAGATTCTTCAAGAAATAA
TTCACCACAAGTACCACATTATGCAAGTAAGAATTCATTTAATAATAATAATAGTAGTAG
TAATCAATCATTAGAAAAAATACAAGAATTGGAAAGTAAAAAAGAACTTGCCTATGAACA
TTTAAGTCCAGCACCACAATCATCATCGTATGAAGATTTAGGATTAAAAGATCAAGTTTT
AGAGAATGTATTTGGTGCAACAGTACGTCAAAAGAAAGCAAGAGTACCTGAGGGATTTAT
AGTGAGTTATACAAAATCAGGTCAACCATTTTTATTATCGGTAGAGTTACAACGTGAAAC
CAATGAAGATTTCATGGCAGCTAATGAACATGCAAATTGAAACTACCAATAAATTGTGCA
XXXXXXXXXXAAGAGTGGTAAAAAATCAACAGAATCTTATAAACCTGAATCTGAAATTTC
TGAAGAATATTTGGAGATTTTGTATAGACAATTTATTGTATATTTAGGTTTACCAATTTA
TCCAATTGTAACTTTATTTGGTGTTGTTTGTAATATTGTTGAATATTATGTTGATAGATT
CAGATTAATTAGAATTTGTAAAAAACCACATAGAATGCAAGGTTCTATGAAAAAGTTTTT
ATCATTTTATTTATTATTCATCTCTTTAATTAGTGTTGCTAGTTATCCGTATGGTTCAGG
TTGGGTTTTAATTCAAATTGGTTTTAAAACTGGAAATTTAAATACTAATTGTGGTTATTT
ATTCGATGGTGATATTCCAGTTTCTGATTCTTCATCTTCAAGTACTGGAAATGGAATTGG
TATTAAAATCTAAAAAAAATAAAAAATATAAAAAAAAATATAAAAAAATAAAGAAAAATA
AA
sequence update 1998.10. 8
Translated Amino Acid sequence 
cv*nfffqilifmki*k*qnsnknink*knrkknkkwqvmmieiqfqwnimtnknynhhn
knynnhhnnnnnnnknynnnnnnnnkyiqv*mi*ilqeiihhkyhimqvrihliiiivvv
inh*kkyknwkvkknlpmni*vqhhnhhrmki*d*kikf*rmylvqqyvkrkqeylrdl*
*viqnqvnhfyyr*SYNVKPMKISWQLMNMQIETTNKLC---

---KSGKKSTESYKPESEISEEYLEILYRQFIVYLGLPIYPIVTLFGVVCNIVEYYVDRF
RLIRICKKPHRMQGSMKKFLSFYLLFISLISVASYPYGSGWVLIQIGFKTGNLNTNCGYL
FDGDIPVSDSSSSSTGNGIGIKI*kk*ki*kki*knkek*
Translated Amino Acid sequence (All Frames) 
Frame A:
cvfkiffsrs*yl*kyknnktviri*inkkiekkikngr****rfnsngtl*ptritttt
trittttttttttttritttttttttniskyk*frffkk*fttsttlck*efi*******
*siirkntrigk*krtcl*tfkssttiiiv*rfrikrssfreciwcnstskeskst*giy
selykirstifiigrvtt*nq*rfhgs**tcklklpinca---

---KSGKKSTESYKPESEISEEYLEILYRQFIVYLGLPIYPIVTLFGVVCNIVEYYVDRF
RLIRICKKPHRMQGSMKKFLSFYLLFISLISVASYPYGSGWVLIQIGFKTGNLNTNCGYL
FDGDIPVSDSSSSSTGNGIGIKI*kk*ki*kki*knkek*

Frame B:
vclkfffpdlniyenikitkq**eyk*ikk*kkk*kmagdddrdsipmehydqqelqppq
qelqqppqqqqqqqqelqqqqqqqqqiypsindldssrnnspqvphyasknsfnnnnsss
nqslekiqeleskkelayehlspapqsssyedlglkdqvlenvfgatvrqkkarvpegfi
vsytksgqpfllsvelqretnedfmaanehan*nyq*iv---

---rvvknqqnlinlnlkflkniwrfcidnllyi*vyqfiql*lylvlfvillnimlids
d*lefvknhieckvl*ksfyhfiyyssl*lvllvirmvqvgf*fklvlklei*ilivviy
smvifqflilhlqvlemelvlkskknkkykkkykkikknk

Frame C:
cv*nfffqilifmki*k*qnsnknink*knrkknkkwqvmmieiqfqwnimtnknynhhn
knynnhhnnnnnnnknynnnnnnnnkyiqv*mi*ilqeiihhkyhimqvrihliiiivvv
inh*kkyknwkvkknlpmni*vqhhnhhrmki*d*kikf*rmylvqqyvkrkqeylrdl*
*viqnqvnhfyyr*SYNVKPMKISWQLMNMQIETTNKLC---

---ew*kinril*t*i*nf*rifgdfv*tiycifrftnlsncnfiwccl*yc*ilc**iq
in*nl*ktt*narfyekvfiilfiihlfn*cc*lsvwfrlgfnsnwf*nwkfky*lwlfi
rw*yssf*ffifkywkwnwy*nlkkiknikknikk*rki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG107 (SSG107Q) /CSM/SS/SSG1-A/SSG107Q.Seq.d/                       1576   0.0
SSM120 (SSM120Q) /CSM/SS/SSM1-A/SSM120Q.Seq.d/                        813   0.0
CFF444 (CFF444Q) /CSM/CF/CFF4-B/CFF444Q.Seq.d/                        775   0.0
AFF355 (AFF355Q) /CSM/AF/AFF3-C/AFF355Q.Seq.d/                        434   e-120
FC-IC0818 (FC-IC0818Q) /CSM/FC-IC/FC-IC0818Q.Seq.d/                   381   e-104
CHC733 (CHC733Q) /CSM/CH/CHC7-B/CHC733Q.Seq.d/                        339   6e-92
VSG390 (VSG390Q) /CSM/VS/VSG3-D/VSG390Q.Seq.d/                         50   8e-05
SHK316 (SHK316Q) /CSM/SH/SHK3-A/SHK316Q.Seq.d/                         50   8e-05
SFE765 (SFE765Q) /CSM/SF/SFE7-C/SFE765Q.Seq.d/                         50   8e-05
CHJ474 (CHJ474Q) /CSM/CH/CHJ4-D/CHJ474Q.Seq.d/                         50   8e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    48   3e-08  10
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    48   1e-07  13
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    48   5e-07  7
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           46   9e-07  11
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    46   5e-06  4
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    44   7e-06  9
BX000991|BX000991.8 Zebrafish DNA sequence from clone CH211-203L7 in linkage group 6.    46   8e-06  8
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    50   1e-05  12
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    44   1e-05  7
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    42   1e-05  6
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF517290_1(EF517290|pid:none) Callithrix jacchus PKDREJ gene, pa...    35   3.7
protein update 2009. 1.30
PSORT 

 psg: 0.82  gvh: 0.33  alm: 0.29  top: 1.00  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG107 is end
5' end seq. ID SSG107F
5' end seq. 
>SSG107F.Seq
TGTGTGTTTAAAATTTTTTTTTCCAGATCTTAATATTTATGAAAATATAAAAATAACAAA
ACAGTAATAAGAATATAAATAAATAAAAAAATAGAAAAAAAAATAAAAAATGGCAGGTGA
TGATGATAGAGATTCAATTCCAATGGAACATTATGACCAACAAGAATTACAACCACCACA
ACAAGAATTACAACAACCACCACAACAACAACAACAACAACAACAAGAATTACAACAACA
ACAACAACAACAACAACAAATATATCCAAGTATAAATGATTTAGATTCTTCAAGAAATAA
TTCACCACAAGTACCACATTATGCAAGTAAGAATTCATTTAATAATAATAATAGTAGTAG
TAATCAATCATTAGAAAAAATACAAGAATTGGAAAGTAAAAAAGAACTTGCCTATGAACA
TTTAAGTCCAGCACCACAATCATCATCGTATGAAGATTTAGGATTAAAAGATCAAGTTTT
AGAGAATGTATTTGGTGCAACAGTACGTCAAAAGAAAGCAAGAGTACCTGAGGGATTTAT
AGTGAGTTATACAAAATCAGGTCAACCATTTTTATTATCGGTAGAGTTACAACGTGAAAC
CAATGAAGATTTCATGGCAGCTAATGAACATGCAAATTGAAACTACCAATAAATTGTGCA
----------
Length of 5' end seq. 660
3' end seq. ID SSG107Z
3' end seq. 
>SSG107Z.Seq
----------AAGAGTGGTAAAAAATCAACAGAATCTTATAAACCTGAATCTGAAATTTC
TGAAGAATATTTGGAGATTTTGTATAGACAATTTATTGTATATTTAGGTTTACCAATTTA
TCCAATTGTAACTTTATTTGGTGTTGTTTGTAATATTGTTGAATATTATGTTGATAGATT
CAGATTAATTAGAATTTGTAAAAAACCACATAGAATGCAAGGTTCTATGAAAAAGTTTTT
ATCATTTTATTTATTATTCATCTCTTTAATTAGTGTTGCTAGTTATCCGTATGGTTCAGG
TTGGGTTTTAATTCAAATTGGTTTTAAAACTGGAAATTTAAATACTAATTGTGGTTATTT
ATTCGATGGTGATATTCCAGTTTCTGATTCTTCATCTTCAAGTACTGGAAATGGAATTGG
TATTAAAATCTAAAAAAAATAAAAAATATAAAAAAAAATATAAAAAAATAAAGAAAAATA
AA
Length of 3' end seq. 472
Connected seq. ID SSG107P
Connected seq. 
>SSG107P.Seq
TGTGTGTTTAAAATTTTTTTTTCCAGATCTTAATATTTATGAAAATATAAAAATAACAAA
ACAGTAATAAGAATATAAATAAATAAAAAAATAGAAAAAAAAATAAAAAATGGCAGGTGA
TGATGATAGAGATTCAATTCCAATGGAACATTATGACCAACAAGAATTACAACCACCACA
ACAAGAATTACAACAACCACCACAACAACAACAACAACAACAACAAGAATTACAACAACA
ACAACAACAACAACAACAAATATATCCAAGTATAAATGATTTAGATTCTTCAAGAAATAA
TTCACCACAAGTACCACATTATGCAAGTAAGAATTCATTTAATAATAATAATAGTAGTAG
TAATCAATCATTAGAAAAAATACAAGAATTGGAAAGTAAAAAAGAACTTGCCTATGAACA
TTTAAGTCCAGCACCACAATCATCATCGTATGAAGATTTAGGATTAAAAGATCAAGTTTT
AGAGAATGTATTTGGTGCAACAGTACGTCAAAAGAAAGCAAGAGTACCTGAGGGATTTAT
AGTGAGTTATACAAAATCAGGTCAACCATTTTTATTATCGGTAGAGTTACAACGTGAAAC
CAATGAAGATTTCATGGCAGCTAATGAACATGCAAATTGAAACTACCAATAAATTGTGCA
----------AAGAGTGGTAAAAAATCAACAGAATCTTATAAACCTGAATCTGAAATTTC
TGAAGAATATTTGGAGATTTTGTATAGACAATTTATTGTATATTTAGGTTTACCAATTTA
TCCAATTGTAACTTTATTTGGTGTTGTTTGTAATATTGTTGAATATTATGTTGATAGATT
CAGATTAATTAGAATTTGTAAAAAACCACATAGAATGCAAGGTTCTATGAAAAAGTTTTT
ATCATTTTATTTATTATTCATCTCTTTAATTAGTGTTGCTAGTTATCCGTATGGTTCAGG
TTGGGTTTTAATTCAAATTGGTTTTAAAACTGGAAATTTAAATACTAATTGTGGTTATTT
ATTCGATGGTGATATTCCAGTTTCTGATTCTTCATCTTCAAGTACTGGAAATGGAATTGG
TATTAAAATCTAAAAAAAATAAAAAATATAAAAAAAAATATAAAAAAATAAAGAAAAATA
AA
Length of connected seq. 1132
Full length Seq ID -
Full length Seq. -
Length of full length seq. -