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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF865
Library SS
(Link to library)
Clone ID SSF865
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSF865Z
(Link to Original site)
Representative DNA sequence 
>SSF865 (SSF865Q) /CSM/SS/SSF8-C/SSF865Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGT
TTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAA
AAAAAAAAAAATAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAA
AGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATATAAAAAAAAACTTTT
AAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCC
CCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTC
CTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGC
AGTCTTTAACAAAAAAAAATATTTAA
sequence update 1997.11. 8
Translated Amino Acid sequence 
---kkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kk***aipwdlekikk
fkkkiknnkk*kknikknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAP
QVSSGLIHHIPMQLSQMYKQSLTKKNI*
Translated Amino Acid sequence (All Frames) 
Frame A:
---kkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kk***aipwdlekikk
fkkkiknnkk*kknikknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAP
QVSSGLIHHIPMQLSQMYKQSLTKKNI*


Frame B:
---kkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkknnnklyhgt*rk*ks
lkkk*kiiknkkki*kktfktllllfgasvklmlrclsppllcitllklr*srapltmll
kypqg*sitflcnslkcissl*qkkif


Frame C:
---kkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikkiiisytmglrenkkv
*kknkk**kikkkykkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rcss
silrvnpshsyatlsnv*avfnkkkyl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-106
own update 2004. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    387   e-115  2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.027  1
BM028890|BM028890.1 IpSkn01670 Skin cDNA library Ictalurus punctatus cDNA 5' similar to Ictacalcin, mRNA sequence.    32   1.6    2
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44   1.7    1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4.    44   1.7    1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING.    44   1.7    1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42   6.5    1
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655.           42   6.5    1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   6.5    1
AL356014|AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23.    42   6.5    1
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   9.0
protein update 2009. 1.30
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSF865 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF865Z
3' end seq. 
>SSF865Z.Seq
----------AAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGT
TTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAA
AAAAAAAAAAATAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAA
AGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATATAAAAAAAAACTTTT
AAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCC
CCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTC
CTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGC
AGTCTTTAACAAAAAAAAATATTTAA
Length of 3' end seq. 436
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -