SSF813
Library SS
(Link to library)
Clone ID SSF813
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05061-1
Original site URL
Representative seq. ID SSF813E
(Link to Original site)
Representative DNA sequence
>SSF813 (SSF813Q) /CSM/SS/SSF8-A/SSF813Q.Seq.d/
ATCAAAATCATTTTGTAAAAAATTCATTTATTTATTTATTTATTTATTAATTTTAAAAAT
TCGATTTAAAACAAAACCCTCAATTTACATTTGAATATCAAAAAAAAAAAAAAAATATAA
TAATAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAATTTATCTATTATCC
AAAATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAACTCAGAAATTAGTC
CATCATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATGGGGAGATAACATTG
AAGATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGGTCACTCATTTGGTG
AAAGTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACCAATCAGTGGTAAAG
AATTCTTTTTAACTCCAACTTTCACTCATGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGTATAAAGAAAAAAAATAATAAAAAATAAAAAAAATAATAATAANNNAAATATATTAT
ATATAAAAATTATAATATATA
sequence update 1999. 4. 7
Translated Amino Acid sequence
qnhfvknsfiylfiy*f*kfdlkqnpqftfeyqkkkkniiikyqyifkki*knnnlsiiq
nkikik*TKSKMNPNSEISPSYAMKLNSNMSDDIWGDNIEDSNPSYSPFLTCSMGHSFGE
SKNECYNFDFKNGAPISGKEFFLTPTFTHG*kkkkkkkknv*rkkiiknkknnnxxnily
ikiiiy


Translated Amino Acid sequence (All Frames)
Frame A:
ikiil*kihlfiylfinfknsi*nktlnlhlnikkkkki***nintylkrykkiiiylls
kik*ksnrqsqk*iqtqklvhhmq*n*iriclmiygeitlkiqiqaihhs*haqwvthlv
kvkmnvtisilrmvhqsvvknsf*lqlslmvkkkkkkkkkmykekk**kikkiiixxiyy
i*kl*yi


Frame B:
sksfckkfiylfiyllilkirfktkpsiyi*iskkkkkynnkisihi*kdikk**fiyyp
k*nknqidkvknesklrn*siicneikfeyv**ymgr*h*rfksklftilnmlngsliw*
k*k*mlqfrf*ewctnqw*rilfnsnfhswlkkkkkkkkkcikkknnkk*kk***xkyii
yknyni


Frame C:
qnhfvknsfiylfiy*f*kfdlkqnpqftfeyqkkkkniiikyqyifkki*knnnlsiiq
nkikik*TKSKMNPNSEISPSYAMKLNSNMSDDIWGDNIEDSNPSYSPFLTCSMGHSFGE
SKNECYNFDFKNGAPISGKEFFLTPTFTHG*kkkkkkkknv*rkkiiknkknnnxxnily
ikiiiy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF813 (SSF813Q) /CSM/SS/SSF8-A/SSF813Q.Seq.d/ 468 e-131
SSF414 (SSF414Q) /CSM/SS/SSF4-A/SSF414Q.Seq.d/ 468 e-131
SSE817 (SSE817Q) /CSM/SS/SSE8-A/SSE817Q.Seq.d/ 468 e-131
SSE232 (SSE232Q) /CSM/SS/SSE2-B/SSE232Q.Seq.d/ 468 e-131
SSC671 (SSC671Q) /CSM/SS/SSC6-C/SSC671Q.Seq.d/ 460 e-128
VHM246 (VHM246Q) /CSM/VH/VHM2-B/VHM246Q.Seq.d/ 40 0.035
VHG476 (VHG476Q) /CSM/VH/VHG4-D/VHG476Q.Seq.d/ 40 0.035
VHF309 (VHF309Q) /CSM/VH/VHF3-A/VHF309Q.Seq.d/ 40 0.035
VHD614 (VHD614Q) /CSM/VH/VHD6-A/VHD614Q.Seq.d/ 40 0.035
VHD595 (VHD595Q) /CSM/VH/VHD5-D/VHD595Q.Seq.d/ 40 0.035

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ946272|AZ946272.1 2M0208E06F Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0208E06 F, DNA sequence. 46 0.47 1
AW568473|AW568473.1 si59c03.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-3197 5' similar to TR:O49857 O49857 ASPARAGINE-BOND SPECIFIC CYSTEINE ENDOPROTEASE. [1] ;, mRNA sequence. 44 1.9 1
BF595000|BF595000.1 su74b05.y1 Gm-c1055 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1055-441 5' similar to TR:O49857 O49857 ASPARAGINE-BOND SPECIFIC CYSTEINE ENDOPROTEASE. [1] ;, mRNA sequence. 44 1.9 1
BE824092|BE824092.1 GM700023A10E10 Gm-r1070 Glycine max cDNA clone Gm-r1070-9043 3', mRNA sequence. 44 1.9 1
BI786258|BI786258.1 sai34g12.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-5304 5' similar to TR:O49857 O49857 ASPARAGINE-BOND SPECIFIC CYSTEINE ENDOPROTEASE. [1] ;, mRNA sequence. 44 1.9 1
BW261273|BW261273.1 Ciona intestinalis cDNA, clone:cign027l09, 5' end, single read. 42 7.3 1
BW293431|BW293431.1 Ciona intestinalis cDNA, clone:cigd004i14, 5' end, single read. 42 7.3 1
AV975463|AV975463.1 Ciona intestinalis cDNA, clone:cieg38f12, 5' end, single read. 42 7.3 1
AV996595|AV996595.1 Ciona intestinalis cDNA, clone:cicl25p16, 5' end, single read. 42 7.3 1
BW254096|BW254096.1 Ciona intestinalis cDNA, clone:citb098k10, 5' end, single read. 42 7.3 1
dna update 2003. 9. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP009049_2462(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 34 2.3
CP000361_1171(CP000361|pid:none) Arcobacter butzleri RM4018, com... 33 3.9
(Q06831) RecName: Full=Transcription factor SOX-4; &X70298_1(X7... 32 8.7

protein update 2009. 3. 6
PSORT

psg: 0.75 gvh: 0.55 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
16.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSF813 is cyt

5' end seq. ID SSF813F
5' end seq.
>SSF813F.Seq
ATCAAAATCATTTTGTAAAAAATTCATTTATTTATTTATTTATTTATTAATTTTAAAAAT
TCGATTTAAAACAAAACCCTCAATTTACATTTGAATATCAAAAAAAAAAAAAAAATAATA
ATAATAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAATTTATCTATTATC
CAAAATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAACTCAGAAATTAGT
CCATCATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATGGGGAGATAACATT
GAAGATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGGTCACTCATTTGGT
GAAAGTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACCAATCAGTGGTAAA
GAATTCTTTTTAACTCCAACTTTCACTCATGGTTAAAAAAAAA----------
Length of 5' end seq. 463
3' end seq. ID SSF813Z
3' end seq.
>SSF813Z.Seq
----------ATAATAATAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAA
TTTATCTATTATCCAAAATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAA
CTCAGAAATTAGTCCATCATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATG
GGGAGATAACATTGAAGATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGG
TCACTCATTTGGTGAAAGTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACC
AATCAGTGGTAAAGAATTCTTTNNNACTCNAACTTTCACTCATGGTTAAAAAAAAAAAAA
AAAAAAAAAATGTATAAAGAAAAAAAATAATAAAAAATAAAAAAAATAATAATAANNNAA
ATATATTATATATAAAAATTATAATATATAATAAAAA
Length of 3' end seq. 447
Connected seq. ID SSF813P
Connected seq.
>SSF813P.Seq
ATCAAAATCATTTTGTAAAAAATTCATTTATTTATTTATTTATTTATTAATTTTAAAAAT
TCGATTTAAAACAAAACCCTCAATTTACATTTGAATATCAAAAAAAAAAAAAAAATAATA
ATAATAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAATTTATCTATTATC
CAAAATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAACTCAGAAATTAGT
CCATCATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATGGGGAGATAACATT
GAAGATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGGTCACTCATTTGGT
GAAAGTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACCAATCAGTGGTAAA
GAATTCTTTTTAACTCCAACTTTCACTCATGGTTAAAAAAAAA----------ATAATAA
TAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAATTTATCTATTATCCAAA
ATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAACTCAGAAATTAGTCCAT
CATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATGGGGAGATAACATTGAAG
ATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGGTCACTCATTTGGTGAAA
GTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACCAATCAGTGGTAAAGAAT
TCTTTNNNACTCNAACTTTCACTCATGGTTAAAAAAAAAAAAAAAAAAAAAAATGTATAA
AGAAAAAAAATAATAAAAAATAAAAAAAATAATAATAANNNAAATATATTATATATAAAA
ATTATAATATATAATAAAAA
Length of connected seq. 910
Full length Seq ID SSF813E
Full length Seq.
>SSF813E.Seq
ATCAAAATCATTTTGTAAAAAATTCATTTATTTATTTATTTATTTATTAATTTTAAAAAT
TCGATTTAAAACAAAACCCTCAATTTACATTTGAATATCAAAAAAAAAAAAAAAATATAA
TAATAAAATATCAATACATATTTAAAAAGATATAAAAAAATAATAATTTATCTATTATCC
AAAATAAAATAAAAATCAAATAGACAAAGTCAAAAATGAATCCAAACTCAGAAATTAGTC
CATCATATGCAATGAAATTAAATTCGAATATGTCTGATGATATATGGGGAGATAACATTG
AAGATTCAAATCCAAGCTATTCACCATTCTTAACATGCTCAATGGGTCACTCATTTGGTG
AAAGTAAAAATGAATGTTACAATTTCGATTTTAAGAATGGTGCACCAATCAGTGGTAAAG
AATTCTTTTTAACTCCAACTTTCACTCATGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGTATAAAGAAAAAAAATAATAAAAAATAAAAAAAATAATAATAANNNAAATATATTAT
ATATAAAAATTATAATATATA
Length of full length seq. 561