SSF753
Library SS
(Link to library)
Clone ID SSF753
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16229-1
Original site URL
Representative seq. ID SSF753E
(Link to Original site)
Representative DNA sequence
>SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/
CAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTACTTTAGCTAAAG
CACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATCAGGTGAACTTT
TCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAG
CCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTATCTCTG
AAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTA
ATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTG
GACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTA
TGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATG
TATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATC
sequence update 1997.11. 8
Translated Amino Acid sequence
VKSVIKVGEKVPMDVTLAKALPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSA
KHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIG
LEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinn


Translated Amino Acid sequence (All Frames)
Frame A:
qlnqllklvkkfqwmll*lkhshqsmvfvqwhqkfyqvnfsktvklfyslfqvlllqlvq
pniyqvllknqkklkkkvslksfvlppmthll*vlgvktlmqvlqllyfqmvtlnslkrl
dlkwmvrlsylvktdlkdml*sltlvlsnilqlkkvvnlmyhllkqs*nnykhkinl*ii


Frame B:
s*isy*sw*kssngcyfs*stptsrwclcngtksfir*tfqrp*scfircsrcfysnlfs
qtftrfy*kirrn*kkryl*nllychq*picyeclg*rr*crycsyftfrw*l*ih*kdw
t*ngw*gfltw*rqiskicydp*lwccqtscs*rrw*i*ciic*snlktiiniksiyk*


Frame C:
VKSVIKVGEKVPMDVTLAKALPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSA
KHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIG
LEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/ 1017 0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/ 1009 0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/ 1007 0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/ 1007 0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/ 993 0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/ 965 0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/ 959 0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/ 957 0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/ 957 0.0
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/ 955 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BD283099|BD283099.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof. 48 2e-06 2
BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence. 48 2e-06 2
AC132016|AC132016.3 Rattus norvegicus clone CH230-218A13, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.45 1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence. 46 0.45 1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence. 46 0.45 1
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome. 46 0.45 1
AX345182|AX345182.1 Sequence 253 from Patent WO0200928. 46 0.45 1
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces. 42 1.1 2
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20. 46 1.2 2
AL353730|AL353730.13 Human DNA sequence from clone RP11-55P9 on chromosome 9. 44 1.8 1
dna update 2003. 9. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub... 141 1e-32
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub... 140 3e-32
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com... 138 8e-32
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat... 136 4e-31
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co... 135 7e-31
CP000248_1994(CP000248|pid:none) Novosphingobium aromaticivorans... 135 9e-31
AE015451_2674(AE015451|pid:none) Pseudomonas putida KT2440 compl... 134 1e-30
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090... 134 2e-30
BX640426_146(BX640426|pid:none) Bordetella parapertussis strain ... 134 2e-30
CU207211_2650(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 133 3e-30
protein update 2009. 7. 7
PSORT

psg: 0.80 gvh: 0.57 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSF753 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSF753E
Full length Seq.
>SSF753E.Seq
CAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATGTTACTTTAGCTAAAG
CACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATCAGGTGAACTTT
TCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAG
CCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTATCTCTG
AAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTA
ATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTG
GACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTA
TGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATG
TATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATC
Length of full length seq. 540