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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF750
Library SS
(Link to library)
Clone ID SSF750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSF750E
(Link to Original site)
Representative DNA sequence 
>SSF750 (SSF750Q) /CSM/SS/SSF7-C/SSF750Q.Seq.d/
GGATGTGTTTGGTGTGGATCAGAAGGTATTTGCACTGAAGGTACATTCTATGGTACTAAA
CCATTAAATATCAATGGTGCCTGTAAAGATTTCATGTGGATGCAATGTAAAATTCAAGGT
CGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTTCTTAATTATTGTCTTCTTCTTTATT
TGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGATAAACACTATCATAACATTCAAGAT
GATGAAACTGAACGTTTGGNTTCTCGTACTCCAATCACTGATAGACGTAGAGATGAAATG
AGAGCTAAATGGGGTATTGGTGCTAAAAATAACAACAACAGCTCAAGTTACCAAAGTGAT
TCATGGAGATAATCTAGTAAAATATAATTCCAAATTAATAATAATAAATAATATAATATA
ATATAATAATAATATGTTTTTTTATGTATAATTAATAAA
sequence update 1997.11. 8
Translated Amino Acid sequence 
GCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAFLIIVFFFI
CLCCCCCRRKKDKHYHNIQDDETERLXSRTPITDRRRDEMRAKWGIGAKNNNNSSSYQSD
SWR*sski*fqinnnk*ynii***yvflciink
Translated Amino Acid sequence (All Frames) 
Frame A:
GCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAFLIIVFFFI
CLCCCCCRRKKDKHYHNIQDDETERLXSRTPITDRRRDEMRAKWGIGAKNNNNSSSYQSD
SWR*sski*fqinnnk*ynii***yvflciink


Frame B:
dvfgvdqkvfalkvhsmvlnh*ismvpvkiscgcnvkfkvvgqf*lllvvps*llssslf
afvvvvveerkintiitfkmmklnvwxlvlqslidvemk*elngvlvlkitttaqvtkvi
hgdnlvkynskliiinnii*ynnnmffyv*li


Frame C:
mclvwirrylh*ryilwy*tikyqwcl*rfhvdam*nsrslgnfnccwwcllnyclllyl
plllll*kker*tls*hsr**n*tfgfsysnh**t*r*nes*mgywc*k*qqqlklpk*f
meii**niipn****ii*yniiiicffmyn**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF765 (VSF765Q) /CSM/VS/VSF7-C/VSF765Q.Seq.d/                        722   0.0
VSF727 (VSF727Q) /CSM/VS/VSF7-B/VSF727Q.Seq.d/                        722   0.0
VSD385 (VSD385Q) /CSM/VS/VSD3-D/VSD385Q.Seq.d/                        722   0.0
VSA477 (VSA477Q) /CSM/VS/VSA4-D/VSA477Q.Seq.d/                        722   0.0
SSM291 (SSM291Q) /CSM/SS/SSM2-D/SSM291Q.Seq.d/                        722   0.0
SSL667 (SSL667Q) /CSM/SS/SSL6-C/SSL667Q.Seq.d/                        722   0.0
SSK837 (SSK837Q) /CSM/SS/SSK8-B/SSK837Q.Seq.d/                        722   0.0
SSJ375 (SSJ375Q) /CSM/SS/SSJ3-D/SSJ375Q.Seq.d/                        722   0.0
SSF750 (SSF750Q) /CSM/SS/SSF7-C/SSF750Q.Seq.d/                        722   0.0
SSE803 (SSE803Q) /CSM/SS/SSE8-A/SSE803Q.Seq.d/                        722   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC120856|AC120856.3 Mus musculus clone RP23-284B21, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.026  5
AC126956|AC126956.5 Rattus norvegicus clone CH230-78A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54  0.079  2
BQ081435|BQ081435.1 san24d08.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-4791 5', mRNA sequence.    48  0.097  1
BX005171|BX005171.8 Mouse DNA sequence from clone RP23-234H6 on chromosome X.    48  0.097  1
AC122770|AC122770.3 Mus musculus clone RP24-155H8, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48  0.097  1
BU419269|BU419269.1 603956870F1 CSEQRBN09 Gallus gallus cDNA clone ChEST925l17 5', mRNA sequence.    48  0.097  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48  0.097  1
AC115707|AC115707.4 Mus musculus chromosome 14 clone RP23-348I6 map 14, WORKING DRAFT SEQUENCE, 4 ordered pieces.    54  0.14  3
B27236|B27236.1 T32C9TF TAMU Arabidopsis thaliana genomic clone T32C9, DNA sequence.    38  0.20  2
AL513534|AL513534.17 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-119F7.    36  0.34  4
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001357_331(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    32   5.3
(Q6AZT7) RecName: Full=Nephrocystin-3;  &BC077320_1(BC077320|pid...    32   6.9
T24744(T24744)hypothetical protein T09E11.11 - Caenorhabditis el...    32   9.0
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.11  top: 0.53  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 1.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSF750 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSF750E
Full length Seq. 
>SSF750E.Seq
GGATGTGTTTGGTGTGGATCAGAAGGTATTTGCACTGAAGGTACATTCTATGGTACTAAA
CCATTAAATATCAATGGTGCCTGTAAAGATTTCATGTGGATGCAATGTAAAATTCAAGGT
CGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTTCTTAATTATTGTCTTCTTCTTTATT
TGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGATAAACACTATCATAACATTCAAGAT
GATGAAACTGAACGTTTGGNTTCTCGTACTCCAATCACTGATAGACGTAGAGATGAAATG
AGAGCTAAATGGGGTATTGGTGCTAAAAATAACAACAACAGCTCAAGTTACCAAAGTGAT
TCATGGAGATAATCTAGTAAAATATAATTCCAAATTAATAATAATAAATAATATAATATA
ATATAATAATAATATGTTTTTTTATGTATAATTAATAAA
Length of full length seq. 459