>SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/
XXXXXXXXXXATTAAATTACAAATTTGGGATACTGCAGGTCAAGAAAGATTCAGGGCAGT
TACACGTTCATATTATAGAGGTGCAGCAGGTGCATTATTAGTTTATGATATTACAAGAAG
AATTACATACAACCACTTAACCACTTGGTTAACTGATGCTAGAAATCTTACTAATCCAAA
CACTGTCATCATGTTAATTGGTAACAAAAAAGATTTGGAAGGTCAAAGAGATGTCACCTA
TGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTTAATTTTTGTGGAATCTAGTGCAAA
AACTGGTGAGAATGTAGAAGAAGCTTTCTTAAGAACTGCTAAATTAATTTTCCAAAGCGT
TCAAGAGGGTAATGTTGATCTCATCCCGGATGGAGGTATTACCAAGAACCCACCACAAAC
CATCACTGATAAACCTCAAGATGCCAGTAAATGTTCTTGTTAATAAAATTTTAAAGAAAA
AAAA

---KLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNT
VIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQ
EGNVDLIPDGGITKNPPQTITDKPQDASKCSC**nfkekk

Frame A:
---lnykfgilqvkkdsgqlhvhiievqqvhy*fmilqeelhttt*plg*lmleilliqt
lssc*lvtkkiwkvkemspmkrllllqnkmv*flwnlvqklvrm*kkls*elln*fskaf
krvmlissrmevlprthhkpslinlkmpvnvlvnkilkkk


Frame B:
---*itnlgycrsrkiqgsytfil*rcsrciisl*yykknyiqplnhlvn*c*ksy*skh
chhvnw*qkrfgrskrchl*rgfcfcktkwfnfcgi*cknw*ecrrsflknc*infpkrs
rg*c*shpgwryyqepttnhh**tsrcq*mfllikf*rkk


Frame C:
---KLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNT
VIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQ
EGNVDLIPDGGITKNPPQTITDKPQDASKCSC**nfkekk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                        924   0.0
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                        924   0.0
SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                        924   0.0
SSK429 (SSK429Q) /CSM/SS/SSK4-B/SSK429Q.Seq.d/                        924   0.0
SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/                        924   0.0
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                        922   0.0
SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/                        922   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                        896   0.0
VSC667 (VSC667Q) /CSM/VS/VSC6-C/VSC667Q.Seq.d/                        894   0.0
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                        882   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U02927|U02927.1 Dictyostelium discoideum Ax3 Rab4 mRNA, complete cds.   839   0.0    2
BP460824|BP460824.1 Sus scrofa mRNA, clone:OVRM10147G06, 5' end, expressed in ovary.    58   2e-16  4
CF979943|CF979943.1 rg83b04.y1 Meloidogyne hapla female SL1 pGEM Meloidogyne hapla cDNA 5' similar to SW:RB14_RAT P35287 RAS-RELATED PROTEIN RAB-14. [1] ;, mRNA sequence.    62   6e-16  4
AI406327|AI406327.1 EST234613 Normalized rat brain, Bento Soares Rattus sp. cDNA clone RBRDM43 3' end, mRNA sequence.    46   5e-15  4
AI013366|AI013366.1 EST208041 Normalized rat spleen, Bento Soares Rattus sp. cDNA clone RSPBK07 3' end, mRNA sequence.    46   5e-15  4
BQ194903|BQ194903.1 UI-R-CN1-cmb-p-04-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone UI-R-CN1-cmb-p-04-0-UI 3', mRNA sequence.    46   8e-15  4
AF112206|AF112206.1 Homo sapiens ras-related protein rab-14 mRNA, complete cds.    62   2e-14  3
M34457|M34457.1 D.discoideum GTP-binding protein (SAS2) gene, complete cds.    88   4e-14  2
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    60   2e-13  4
AI409853|AI409853.1 EST238146 Normalized rat placenta, Bento Soares Rattus sp. cDNA clone RPLDM43 3' end, mRNA sequence.    46   2e-13  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA...   285   3e-76
AJ968956_1(AJ968956|pid:none) Mus musculus mRNA for RAB14 protei...   215   5e-55
BT072015_1(BT072015|pid:none) Salmo salar clone ssal-rgf-507-208...   215   5e-55
(P61107) RecName: Full=Ras-related protein Rab-14;  &(Q52NJ6) Re...   215   5e-55
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa...   214   1e-54
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209...   214   1e-54
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco...   213   2e-54
AJ968960_1(AJ968960|pid:none) Mus musculus mRNA for RAB14 protei...   213   2e-54
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei...   213   2e-54
AJ968958_1(AJ968958|pid:none) Mus musculus mRNA for RAB14 protei...   212   3e-54

 psg: 0.75  gvh: 0.45  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSF727 is nuc

>SSF727Z.Seq
----------ATTAAATTACAAATTTGGGATACTGCAGGTCAAGAAAGATTCAGGGCAGT
TACACGTTCATATTATAGAGGTGCAGCAGGTGCATTATTAGTTTATGATATTACAAGAAG
AATTACATACAACCACTTAACCACTTGGTTAACTGATGCTAGAAATCTTACTAATCCAAA
CACTGTCATCATGTTAATTGGTAACAAAAAAGATTTGGAAGGTCAAAGAGATGTCACCTA
TGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTTAATTTTTGTGGAATCTAGTGCAAA
AACTGGTGAGAATGTAGAAGAAGCTTTCTTAAGAACTGCTAAATTAATTTTCCAAAGCGT
TCAAGAGGGTAATGTTGATCTCATCCCGGATGGAGGTATTACCAAGAACCCACCACAAAC
CATCACTGATAAACCTCAAGATGCCAGTAAATGTTCTTGTTAATAAAATTTTAAAGAAAA
AAAA