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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF714
Library SS
(Link to library)
Clone ID SSF714
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14352-1
Original site URL
Representative seq. ID SSF714F
(Link to Original site)
Representative DNA sequence 
>SSF714 (SSF714Q) /CSM/SS/SSF7-A/SSF714Q.Seq.d/
TTTTTTTATTATTTAAACTTTTTTTTATTTTATTATATTTTATTTTATAATTTAAAAAAT
AATAATAATTATGGCAGATATTGGAGGAAAAGTTTATTTTGTAAGTGGAGCTAGTGGAGG
GATTGGGTTAGAGATGGTTATTCAATTATTAGGACAAGGTATGAGGGTTGCAGCAACTAG
TAGAGATAAAAAGAAATTAATTCAAGTTTTAAAAGAGAGGGATAATAGTTTGATTAGAGA
TGATAATTTCATTGCAGTTGAAATGGATTTAAGTTCAGAACATTCAATAAAGAAAGCAAT
CTCTGAATGTATTGAAAAATTTAAGACAATTTATTGTGTTATCAATAACAGTGGATATGC
AATCAAAGGTACAATTGAAGAACTAAGTTTAAAAGAGATTCAAGAGAATTTCAACATCAA
TTGTTTCGGACCAATGATGGTGATTCATCATTTCATGCCACATCTTAAATGTAAACCATA
TAGTGATCCAAGAATCATCAATGTATCATCAGTAGTTGGATTTAACGGTGATTTAATGAA
CCGATTTCCATGTTATGTCTCAAGTAAATTTGCATTGGACGGATTCACTGAATCAATTTC
AAATGACTTGAAAAAGTATGATATCAAATGTACAACGGTCAAACCTGGTTATTTTATAAC
ACCATTCAATGATCATATCATTCXXXXXXXXXX
sequence update 1998.10. 8
Translated Amino Acid sequence 
ffii*tffyfiifyfii*KIIIIMADIGGKVYFVSGASGGIGLEMVIQLLGQGMRVAATS
RDKKKLIQVLKERDNSLIRDDNFIAVEMDLSSEHSIKKAISECIEKFKTIYCVINNSGYA
IKGTIEELSLKEIQENFNINCFGPMMVIHHFMPHLKCKPYSDPRIINVSSVVGFNGDLMN
RFPCYVSSKFALDGFTESISNDLKKYDIKCTTVKPGYFITPFNDHII---
Translated Amino Acid sequence (All Frames) 
Frame A:
ffyylnfflfyyilfynlknnnnygrywrkslfckws*wrdwvrdgysiirtryegcsn*
*r*keinssfkreg**fd*r**fhcs*ngfkfrtfnkesnl*my*ki*dnllcyq*qwic
nqryn*rtkfkrdsrefqhqlfrtndgdssfhats*m*ti**sknhqciisswi*r*fne
pismlclk*icigrih*infk*lekv*yqmyngqtwlfyntiq*syh---


Frame B:
ffii*tffyfiifyfii*KIIIIMADIGGKVYFVSGASGGIGLEMVIQLLGQGMRVAATS
RDKKKLIQVLKERDNSLIRDDNFIAVEMDLSSEHSIKKAISECIEKFKTIYCVINNSGYA
IKGTIEELSLKEIQENFNINCFGPMMVIHHFMPHLKCKPYSDPRIINVSSVVGFNGDLMN
RFPCYVSSKFALDGFTESISNDLKKYDIKCTTVKPGYFITPFNDHII---


Frame C:
fllfklffillyfil*fkk***lwqileekfil*velveglg*rwlfny*dkv*glqqlv
eikrn*fkf*krgiiv*lemiislqlkwi*vqniq*rkqslnvlknlrqfivlsitvdmq
skvqlkn*v*krfkristsivsdq*w*fiischilnvnhiviqessmyhq*ldltvi**t
dfhvmsqvnlhwtdslnqfqmt*ksmisnvqrsnlvil*hhsmiis---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF714 (SSF714Q) /CSM/SS/SSF7-A/SSF714Q.Seq.d/                       1249   0.0
SFD409 (SFD409Q) /CSM/SF/SFD4-A/SFD409Q.Seq.d/                       1249   0.0
CHI703 (CHI703Q) /CSM/CH/CHI7-A/CHI703Q.Seq.d/                       1249   0.0
AHN250 (AHN250Q) /CSM/AH/AHN2-C/AHN250Q.Seq.d/                         40   0.044
VSK455 (VSK455Q) /CSM/VS/VSK4-C/VSK455Q.Seq.d/                         38   0.17
VSG482 (VSG482Q) /CSM/VS/VSG4-D/VSG482Q.Seq.d/                         38   0.17
SSK480 (SSK480Q) /CSM/SS/SSK4-D/SSK480Q.Seq.d/                         38   0.17
SSH415 (SSH415Q) /CSM/SS/SSH4-A/SSH415Q.Seq.d/                         38   0.17
SSE457 (SSE457Q) /CSM/SS/SSE4-C/SSE457Q.Seq.d/                         38   0.17
SHE785 (SHE785Q) /CSM/SH/SHE7-D/SHE785Q.Seq.d/                         38   0.17
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   2e-09  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-07  14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   4e-05  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   4e-05  17
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38   1e-04  9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   8e-04  13
BX004878|BX004878.8 Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6.    40   0.002  6
BX072537|BX072537.7 Zebrafish DNA sequence from clone DKEY-15F17.    40   0.003  7
BX927241|BX927241.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-184P18.    40   0.003  9
BX248120|BX248120.6 Zebrafish DNA sequence from clone CH211-160J6 in linkage group 18.    36   0.003  8
dna update 2004. 2.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1834(CP000685|pid:none) Flavobacterium johnsoniae UW101...   148   2e-34
CP001026_795(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch...   148   2e-34
CP000284_588(CP000284|pid:none) Methylobacillus flagellatus KT, ...   132   7e-30
AC117072_34(AC117072|pid:none) Dictyostelium discoideum chromoso...   119   7e-26
AJ628955_39(AJ628955|pid:none) Streptomyces rimosus subsp. parom...   117   2e-25
CP000480_1581(CP000480|pid:none) Mycobacterium smegmatis str. MC...   114   2e-24
CP001037_530(CP001037|pid:none) Nostoc punctiforme PCC 73102, co...   113   6e-24
CP000233_44(CP000233|pid:none) Lactobacillus salivarius UCC118, ...   112   1e-23
CP000629_710(CP000629|pid:none) Agrobacterium radiobacter K84 ch...   112   1e-23
AC116960_60(AC116960|pid:none) Dictyostelium discoideum chromoso...   112   1e-23
protein update 2009. 6.11
PSORT 

 psg: 0.80  gvh: 0.47  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSF714 is cyt
5' end seq. ID SSF714F
5' end seq. 
>SSF714F.Seq
TTTTTTTATTATTTAAACTTTTTTTTATTTTATTATATTTTATTTTATAATTTAAAAAAT
AATAATAATTATGGCAGATATTGGAGGAAAAGTTTATTTTGTAAGTGGAGCTAGTGGAGG
GATTGGGTTAGAGATGGTTATTCAATTATTAGGACAAGGTATGAGGGTTGCAGCAACTAG
TAGAGATAAAAAGAAATTAATTCAAGTTTTAAAAGAGAGGGATAATAGTTTGATTAGAGA
TGATAATTTCATTGCAGTTGAAATGGATTTAAGTTCAGAACATTCAATAAAGAAAGCAAT
CTCTGAATGTATTGAAAAATTTAAGACAATTTATTGTGTTATCAATAACAGTGGATATGC
AATCAAAGGTACAATTGAAGAACTAAGTTTAAAAGAGATTCAAGAGAATTTCAACATCAA
TTGTTTCGGACCAATGATGGTGATTCATCATTTCATGCCACATCTTAAATGTAAACCATA
TAGTGATCCAAGAATCATCAATGTATCATCAGTAGTTGGATTTAACGGTGATTTAATGAA
CCGATTTCCATGTTATGTCTCAAGTAAATTTGCATTGGACGGATTCACTGAATCAATTTC
AAATGACTTGAAAAAGTATGATATCAAATGTACAACGGTCAAACCTGGTTATTTTATAAC
ACCATTCAATGATCATATCATTC----------
Length of 5' end seq. 683
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -