SSF655
Library SS
(Link to library)
Clone ID SSF655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16501-1
Original site URL
Representative seq. ID SSF655F
(Link to Original site)
Representative DNA sequence
>SSF655 (SSF655Q) /CSM/SS/SSF6-C/SSF655Q.Seq.d/
CTTATTTATCCTTTACACAAGTGGTAGCACTGGTACACCAAAGGGTTTAGTACATACTCA
GGCTGGTTATCTACTATACGCCGCAATGACTCATCGTTATGTTTTCGATTATCACGATTC
CGATGTTTATGCTTGTATGGCTGATGTTGGTTGGATTACAGGTCATAGTTATATCGTTTA
TGGTCCATTGGCAAATGNNNCAACAACTTTTATCTTTGAGGGTACTCCTCTTTATCCAAC
TCCAGCACGTTATTGGGAAATGGTACAACGTCATAAAATCACTCAATTCTATACAGCACC
AACTGCAATTCGTTCACTAATGAAATTCCCAATATCATTTACTCAACAATCCGATAAATC
ATCCCTTAGAGTTTTAGGTTCAGTCGGTGAACCAATTAATCCTGAAGCCTGGAGATGGTT
CAATACAAACGTTGGTGAAGGTCGTTGTGCAATCGTTGATACCTATTGGCAAACTGAAAG
TGGTGGTCATTTAATTACTCCATTACCTGGTGTTACTTCAACTAAACCTGGTTCAGCAAC
TAAACCTTTCTTTGGTATAGAATTACAAGTTTTAGACTCAAAAACTGGTGAACGTTTATA
TATTAATCCCGATATCAATGGTTGTAAAGAAATTTCTGGTGTATTGGCAATCTCTAAACC
TTGGCCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTXXXXXXXXXX
sequence update 1998.10. 5
Translated Amino Acid sequence
LFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVYACMADVGWITGHSYIVY
GPLANXXTTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAIRSLMKFPISFTQQSDKS
SLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESGGHLITPLPGVTSTKPGSAT
KPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAISKPWPGIARSVYRSHGRY---


Translated Amino Acid sequence (All Frames)
Frame A:
liyplhkw*hwytkgfstysgwlstirrndsslcfrlsrfrclclyg*cwldyrs*lyrl
wsigkxxnnfyl*gysslsnsstllgngtts*nhsilystncnsftneipniiystir*i
ip*sfrfsr*tn*s*slemvqykrw*rslcnr*yllan*kwwsfnysitwcyfn*twfsn
*tflwyritsfrlknw*tfiy*sryqwl*rnfwcignl*tlarycsfslsfswsl---


Frame B:
LFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVYACMADVGWITGHSYIVY
GPLANXXTTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAIRSLMKFPISFTQQSDKS
SLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESGGHLITPLPGVTSTKPGSAT
KPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAISKPWPGIARSVYRSHGRY---


Frame C:
ylsftqvvalvhqrv*yilrlviyytpq*livmfsiitipmfmlvwlmlvglqvivisfm
vhwqmxqqllslrvllfiqlqhvigkwynvikslnsiqhqlqfvh**nsqyhllnnpinh
plef*vqsvnqlilkpgdgsiqtlvkvvvqslipigklkvvvi*llhylvllqlnlvqql
nlslv*nykf*tqklvnvyilipismvvkkflvywqslnlgqvllvqfivlmvvi---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSF655 (SSF655Q) /CSM/SS/SSF6-C/SSF655Q.Seq.d/ 1386 0.0
SSF278 (SSF278Q) /CSM/SS/SSF2-D/SSF278Q.Seq.d/ 577 e-164
VHO771 (VHO771Q) /CSM/VH/VHO7-C/VHO771Q.Seq.d/ 476 e-133
AHI132 (AHI132Q) /CSM/AH/AHI1-B/AHI132Q.Seq.d/ 446 e-124
VHQ253 (VHQ253Q) /CSM/VH/VHQ2-C/VHQ253Q.Seq.d/ 412 e-114
AFE757 (AFE757Q) /CSM/AF/AFE7-C/AFE757Q.Seq.d/ 381 e-104
CHF658 (CHF658Q) /CSM/CH/CHF6-C/CHF658Q.Seq.d/ 351 9e-96
CFH854 (CFH854Q) /CSM/CF/CFH8-C/CFH854Q.Seq.d/ 341 9e-93
SFF506 (SFF506Q) /CSM/SF/SFF5-A/SFF506Q.Seq.d/ 315 5e-85
VHO673 (VHO673Q) /CSM/VH/VHO6-D/VHO673Q.Seq.d/ 313 2e-84

own update 2003. 6.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 1378 0.0 1
AL389602|AL389602.1 Medicago truncatula EST MtBC56A04F1 : T3 end of clone MtBC56A04 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 64 1e-14 3
AR319414|AR319414.1 Sequence 1964 from patent US 6562958. 52 5e-07 2
AF535132|AF535132.1 Candida albicans acetyl-CoA synthetase (ACS2) gene, partial cds. 40 3e-06 3
AE017164|AE017164.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 4 of 6 of the complete genome. 64 3e-06 1
AL392834|AL392834.1 T3 end of clone AR0AA007B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 42 7e-06 3
AL392911|AL392911.1 T3 end of clone AR0AA007F10 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 42 7e-06 3
AL033502|AL033502.1 C.albicans cosmid Ca38F10. 48 4e-05 3
AX489103|AX489103.1 Sequence 6403 from Patent WO02053728. 40 4e-04 3
U24082|U24082.1 Cryptosporidium parvum acetyl-CoA synthetase gene, complete cds. 40 4e-04 3
dna update 2004. 2.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Z60) RecName: Full=Acetyl-coenzyme A synthetase; EC... 492 e-138
AC115612_37(AC115612|pid:none) Dictyostelium discoideum chromoso... 489 e-137
CP000830_3537(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 316 5e-85
(Q01576) RecName: Full=Acetyl-coenzyme A synthetase; EC... 314 1e-84
CR940353_190(CR940353|pid:none) Theileria annulata strain Ankara... 313 3e-84
CP000362_2174(CP000362|pid:none) Roseobacter denitrificans OCh 1... 313 4e-84
Y15418_1(Y15418|pid:none) Coprinus cinereus acs-1 gene. 312 7e-84
CP000264_3703(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 311 1e-83
CP000577_2215(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 310 2e-83
CP000143_2185(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 310 2e-83
protein update 2009. 6.11
PSORT

psg: 0.90 gvh: 0.43 alm: 0.48 top: 0.57 tms: 0.00 mit: 0.28 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSF655 is cyt

5' end seq. ID SSF655F
5' end seq.
>SSF655F.Seq
CTTATTTATCCTTTACACAAGTGGTAGCACTGGTACACCAAAGGGTTTAGTACATACTCA
GGCTGGTTATCTACTATACGCCGCAATGACTCATCGTTATGTTTTCGATTATCACGATTC
CGATGTTTATGCTTGTATGGCTGATGTTGGTTGGATTACAGGTCATAGTTATATCGTTTA
TGGTCCATTGGCAAATGNNNCAACAACTTTTATCTTTGAGGGTACTCCTCTTTATCCAAC
TCCAGCACGTTATTGGGAAATGGTACAACGTCATAAAATCACTCAATTCTATACAGCACC
AACTGCAATTCGTTCACTAATGAAATTCCCAATATCATTTACTCAACAATCCGATAAATC
ATCCCTTAGAGTTTTAGGTTCAGTCGGTGAACCAATTAATCCTGAAGCCTGGAGATGGTT
CAATACAAACGTTGGTGAAGGTCGTTGTGCAATCGTTGATACCTATTGGCAAACTGAAAG
TGGTGGTCATTTAATTACTCCATTACCTGGTGTTACTTCAACTAAACCTGGTTCAGCAAC
TAAACCTTTCTTTGGTATAGAATTACAAGTTTTAGACTCAAAAACTGGTGAACGTTTATA
TATTAATCCCGATATCAATGGTTGTAAAGAAATTTCTGGTGTATTGGCAATCTCTAAACC
TTGGCCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCT----------
Length of 5' end seq. 708
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -