AFL289
Library AF
(Link to library)
Clone ID AFL289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL289F
(Link to Original site)
Representative DNA sequence
>AFL289 (AFL289Q) /CSM/AF/AFL2-D/AFL289Q.Seq.d/
ATTGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAA
AAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ivvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---


Frame B:
l*yfvxiqikyqyn*kklklnl*nqfvtktsnlkkknqkk---


Frame C:
csilxifklnintikks*n*ickinl*qklvi*kkktkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/ 149 1e-35
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 149 1e-35
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/ 149 1e-35
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/ 149 1e-35
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 149 1e-35
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/ 149 1e-35
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/ 149 1e-35
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/ 149 1e-35
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/ 149 1e-35
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/ 149 1e-35

own update 2003. 9.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 82 5e-29 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 1e-26 2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 82 2e-12 1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 80 9e-12 1
AC148398|AC148398.6 Medicago truncatula clone mth2-24c23, WORKING DRAFT SEQUENCE, 2 ordered pieces. 32 0.014 7
AC148398|AC148398.6 Medicago truncatula clone mth2-24c23, WORKING DRAFT SEQUENCE, 2 ordered pieces. 32 0.015 7
BX322622|BX322622.10 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8. 36 0.045 5
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING. 46 0.12 1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 28 0.22 3
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. 40 0.31 2
dna update 2004. 8.10
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 58,313,455
protein update 2009. 4.25
PSORT -
5' end seq. ID AFL289F
5' end seq.
>AFL289F.Seq
ATTGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAA
AAA----------
Length of 5' end seq. 123
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -