SSF582
Library SS
(Link to library)
Clone ID SSF582
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01856-1
Original site URL
Representative seq. ID SSF582Z
(Link to Original site)
Representative DNA sequence
>SSF582 (SSF582Q) /CSM/SS/SSF5-D/SSF582Q.Seq.d/
XXXXXXXXXXTAAAAATAAAAAATTTTATTGTGAAGGTTCTGTTTTCAGTTGGGGTAGTA
AAATAAAAATGTTTAGCCAAGATACAAATCAATTAATTTTTGTAATTAGACAAAAAGTTA
AATTTTCATTTTATAAAAAATATTTTATCTATGATGGTAATGATAACCTTTTGGCAACAG
TTAAACAAAAATCATTGTTTAAACCAAAATTAGAAATCGTTTTAAATGAAAATGAGCAAT
ACACATGTAAAGGTGATTTTTTTAGTTATAATTTTCAAATCTTAGATGATGGTCTTCCAA
TTGGAAGTGTTACAAAGAGAGTATTATCATGGGGTGATACATATATGTTGGATATATCAG
AGAATTTCGAACCATCCTTCTTTGTTGCAATTGTTATTACAATTGACGATTGTGTTCATA
GAGAAAACAATGGATAATAGTTTATATTAATTTTTTGACCCCTTAAAAAGTTTATATGAA
TATAAAAACAAAATTATTATTATTAAAATAAATTTAAAATAATCTTTTAAATTTATAAAC
AATTGCATTCATTATTTTTCATTTAAAAAAATTAATTAATTTAGAATTCCAATTGTCAGG
AAAGAAAAAA
sequence update 1997.11. 2
Translated Amino Acid sequence
---KNKKFYCEGSVFSWGSKIKMFSQDTNQLIFVIRQKVKFSFYKKYFIYDGNDNLLATV
KQKSLFKPKLEIVLNENEQYTCKGDFFSYNFQILDDGLPIGSVTKRVLSWGDTYMLDISE
NFEPSFFVAIVITIDDCVHRENNG**filif*plkkfi*i*kqnyyy*nkfkiif*iykq
lhslffi*kn*li*nsncqerk


Translated Amino Acid sequence (All Frames)
Frame A:
---KNKKFYCEGSVFSWGSKIKMFSQDTNQLIFVIRQKVKFSFYKKYFIYDGNDNLLATV
KQKSLFKPKLEIVLNENEQYTCKGDFFSYNFQILDDGLPIGSVTKRVLSWGDTYMLDISE
NFEPSFFVAIVITIDDCVHRENNG**filif*plkkfi*i*kqnyyy*nkfkiif*iykq
lhslffi*kn*li*nsncqerk


Frame B:
---kiknfivkvlfsvgvvk*kclakiqin*fl*ldkklnfhfiknilsmmvmitfwqql
nknhclnqn*ksf*mkmsnthvkviflviifks*mmvfqlevlqreyyhgvihicwiyqr
isnhpsllqlllqltivfiektmdnsly*ffdplkslyeyknkiiiikinlk*sfkfinn
cihyfsfkkin*fripivrkek


Frame C:
---k*kill*rfcfqlg**nknv*pryksinfcn*tks*ifil*kifyl*w***pfgns*
tkiiv*tkirnrfk*k*aihm*r*ff*l*fsnlr*wssnwkcykesiimg*yiyvgyire
frtillccncyyn*rlcs*rkqwiivyinfltp*kvymniktkllllk*i*nnllnl*ti
afiifhlkklinlefqlsgkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM271 (SSM271Q) /CSM/SS/SSM2-C/SSM271Q.Seq.d/ 827 0.0
SSF582 (SSF582Q) /CSM/SS/SSF5-D/SSF582Q.Seq.d/ 827 0.0
SSJ181 (SSJ181Q) /CSM/SS/SSJ1-D/SSJ181Q.Seq.d/ 803 0.0
VSJ596 (VSJ596Q) /CSM/VS/VSJ5-D/VSJ596Q.Seq.d/ 718 0.0
SSG313 (SSG313Q) /CSM/SS/SSG3-A/SSG313Q.Seq.d/ 718 0.0
SSM108 (SSM108Q) /CSM/SS/SSM1-A/SSM108Q.Seq.d/ 704 0.0
SSF839 (SSF839Q) /CSM/SS/SSF8-B/SSF839Q.Seq.d/ 575 e-163
SSB341 (SSB341Q) /CSM/SS/SSB3-B/SSB341Q.Seq.d/ 418 e-116
SSD645 (SSD645Q) /CSM/SS/SSD6-B/SSD645Q.Seq.d/ 337 1e-91
SFE281 (SFE281Q) /CSM/SF/SFE2-D/SFE281Q.Seq.d/ 40 0.038

own update 2004. 7.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 3e-08 15
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 34 4e-06 11
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 32 1e-05 14
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 34 2e-05 20
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 2e-05 12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-05 16
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 32 5e-05 13
AR409405|AR409405.1 Sequence 1 from patent US 6632935. 38 6e-05 14
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 38 6e-05 14
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 34 1e-04 24
dna update 2004. 2.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000813_3612(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 62 9e-09
CP000560_3492(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 60 4e-08
AM412317_1228(AM412317|pid:none) Clostridium botulinum A str. AT... 59 8e-08
CP000962_1287(CP000962|pid:none) Clostridium botulinum A3 str. L... 59 1e-07
CP000114_828(CP000114|pid:none) Streptococcus agalactiae A909, c... 53 6e-06
CP001022_2966(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 45 0.002
AP009256_1251(AP009256|pid:none) Bifidobacterium adolescentis AT... 40 0.065
CP000048_245(CP000048|pid:none) Borrelia hermsii DAH, complete g... 36 0.72
BX571660_81(BX571660|pid:none) Wolinella succinogenes, complete ... 36 0.94
EU956268_1(EU956268|pid:none) Zea mays clone 1559883 hypothetica... 35 1.2
protein update 2009. 6.11
PSORT

psg: 0.88 gvh: 0.27 alm: 0.37 top: 0.33 tms: 0.00 mit: 0.21 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSF582 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF582Z
3' end seq.
>SSF582Z.Seq
----------TAAAAATAAAAAATTTTATTGTGAAGGTTCTGTTTTCAGTTGGGGTAGTA
AAATAAAAATGTTTAGCCAAGATACAAATCAATTAATTTTTGTAATTAGACAAAAAGTTA
AATTTTCATTTTATAAAAAATATTTTATCTATGATGGTAATGATAACCTTTTGGCAACAG
TTAAACAAAAATCATTGTTTAAACCAAAATTAGAAATCGTTTTAAATGAAAATGAGCAAT
ACACATGTAAAGGTGATTTTTTTAGTTATAATTTTCAAATCTTAGATGATGGTCTTCCAA
TTGGAAGTGTTACAAAGAGAGTATTATCATGGGGTGATACATATATGTTGGATATATCAG
AGAATTTCGAACCATCCTTCTTTGTTGCAATTGTTATTACAATTGACGATTGTGTTCATA
GAGAAAACAATGGATAATAGTTTATATTAATTTTTTGACCCCTTAAAAAGTTTATATGAA
TATAAAAACAAAATTATTATTATTAAAATAAATTTAAAATAATCTTTTAAATTTATAAAC
AATTGCATTCATTATTTTTCATTTAAAAAAATTAATTAATTTAGAATTCCAATTGTCAGG
AAAGAAAAAA
Length of 3' end seq. 600
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -