>SSF561 (SSF561Q) /CSM/SS/SSF5-C/SSF561Q.Seq.d/
XXXXXXXXXXGGTGCTATGGGTGTCCCAGCTGCTTTAGTTTTCACAGTTATGGGTGCCGC
TTATGGTACTGCTAAAGCCTCTGTTGGTATTTCAAATATGGGTGTTATGAAACCAGATCT
TGTAATTAAAGCTTTCATTCCAGTTATTTTTGCTGGTGTTATTGCTATCTATGGTCTTAT
TATTTGTGTTATTCTCGTCGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATC
TTTCACTGATTTAGGTGCTGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGC
TATTGGTATTGTTGGTGACTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGT
TATTATGATGCTTATCCTTATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGG
TATTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAA
CAGTGGTAACGTTATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTA
AAATAAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAAAAAAAA

---AMGVPAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLII
CVILVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVI
MMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*n
k*ikinkkkisk*kk

Frame A:
---vlwvsqll*fsqlwvplmvllkpllvfqiwvl*nqil*lklsfqlfllvlllsmvll
fvlfssvvsnqmptip**nlsli*vlv*lsvsvvlllvwllvllvtlvlelsvnnqnytl
l*clslfslkllvymv*llvfyyhlsqipiaqvkl*fh*tvvtllvktk*lykktinnik
ink*k*tkkkflnkkk


Frame B:
---cygcpscfsfhsygcrlwyc*slcwyfkygcyetrscn*sfhssyfcwcycylwsyy
lcysrrwyqtkcqlylneifh*frcwfncrslwsccwygywycw*lwc*sfrsttkiiry
ydaypyfl*sswfiwfnywyfiiiclryllprssfssikqw*ryw*klnsfikkq*iilk
*inknkqkknf*ikk


Frame C:
---AMGVPAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLII
CVILVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVI
MMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*n
k*ikinkkkisk*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF561 (SSF561Q) /CSM/SS/SSF5-C/SSF561Q.Seq.d/                       1001   0.0
SSM619 (SSM619Q) /CSM/SS/SSM6-A/SSM619Q.Seq.d/                        993   0.0
SSL119 (SSL119Q) /CSM/SS/SSL1-A/SSL119Q.Seq.d/                        993   0.0
SSK860 (SSK860Q) /CSM/SS/SSK8-C/SSK860Q.Seq.d/                        993   0.0
SSK788 (SSK788Q) /CSM/SS/SSK7-D/SSK788Q.Seq.d/                        993   0.0
SSK253 (SSK253Q) /CSM/SS/SSK2-C/SSK253Q.Seq.d/                        993   0.0
SSI377 (SSI377Q) /CSM/SS/SSI3-D/SSI377Q.Seq.d/                        993   0.0
SSI194 (SSI194Q) /CSM/SS/SSI1-D/SSI194Q.Seq.d/                        993   0.0
SSG893 (SSG893Q) /CSM/SS/SSG8-D/SSG893Q.Seq.d/                        993   0.0
SSF681 (SSF681Q) /CSM/SS/SSF6-D/SSF681Q.Seq.d/                        993   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.   993   0.0    1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   993   0.0    1
CF081691|CF081691.1 QHL14B02.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL14B02, mRNA sequence.    76   5e-15  2
BE202832|BE202832.1 EST402854 KV1 Medicago truncatula cDNA clone pKV1-3M16, mRNA sequence.    68   1e-13  3
BF003360|BF003360.1 EST431858 KV1 Medicago truncatula cDNA clone pKV1-5F23, mRNA sequence.    68   1e-13  3
AW980808|AW980808.1 EST391961 GVN Medicago truncatula cDNA clone pGVN-58D18, mRNA sequence.    68   1e-13  3
BF635761|BF635761.1 NF007A03DT1F1018 Drought Medicago truncatula cDNA clone NF007A03DT 5', mRNA sequence.    68   2e-13  3
BE203450|BE203450.1 EST403472 KV1 Medicago truncatula cDNA clone pKV1-5F21, mRNA sequence.    68   2e-13  3
CA990137|CA990137.1 EST643645 GESD Medicago truncatula cDNA clone GESD-27N3, mRNA sequence.    68   2e-13  3
BG449150|BG449150.1 NF053F04IN1F1032 Insect herbivory Medicago truncatula cDNA clone NF053F04IN 5', mRNA sequence.    68   2e-13  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...   259   5e-68
(Q24808) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   143   3e-33
(Q24810) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   142   5e-33
(Q17046) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   139   4e-32
(Q26250) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   137   2e-31
BT071491_1(BT071491|pid:none) Picea sitchensis clone WS02917_E06...   136   5e-31
(Q612A5) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   136   5e-31
DQ443153_1(DQ443153|pid:none) Bombyx mori vacuolar H+ ATP syntha...   135   6e-31
S40714(S40714;T37236;T37270)probable H+-exporting ATPase (EC 3.6...   135   6e-31
BT051501_1(BT051501|pid:none) Medicago truncatula clone MTYF1_F2...   135   6e-31

 psg: 0.96  gvh: 0.55  alm: 0.14  top: 0.53  tms: 0.27  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSF561 is end

>SSF561Z.Seq
----------GGTGCTATGGGTGTCCCAGCTGCTTTAGTTTTCACAGTTATGGGTGCCGC
TTATGGTACTGCTAAAGCCTCTGTTGGTATTTCAAATATGGGTGTTATGAAACCAGATCT
TGTAATTAAAGCTTTCATTCCAGTTATTTTTGCTGGTGTTATTGCTATCTATGGTCTTAT
TATTTGTGTTATTCTCGTCGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATC
TTTCACTGATTTAGGTGCTGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGC
TATTGGTATTGTTGGTGACTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGT
TATTATGATGCTTATCCTTATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGG
TATTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAA
CAGTGGTAACGTTATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTA
AAATAAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAAAAAAAA