SSF544
Library SS
(Link to library)
Clone ID SSF544
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01588-1
Original site URL
Representative seq. ID SSF544Z
(Link to Original site)
Representative DNA sequence
>SSF544 (SSF544Q) /CSM/SS/SSF5-B/SSF544Q.Seq.d/
XXXXXXXXXXGTTTTACATAGGGATTTAAAACCACAAAATCTTTTAATTAATAGAAAAGG
TGAATTAAAATTAGCGGATTTTGGTTTAGCAAGAGCATTTGGTATACCAGTTAGAACATA
TTCACATGAAGTAGTAACATTATGGTATAGAGCACCAGATGTGTTGATGGGATCAAGAAA
GTATTCAACTCCAATTGATATCTGGTCAGCAGGTTGTATTTTTGCAGAGATGGCATCAGG
TAGACCATTATTCCCTGGTTCAGGAACAAGTGATCAATTGTTTAGAATATTTAAGATATT
GGGAACTCCAAATGAAGAGAGTTGGCCATCAATTACTGAATTACCAGAATATAAAACTGA
TTTCCCTGTACATCCTGCTCATCAATTATCATCAATCGTACATGGTCTCGATGAAAAAGG
TTTAAATTTACTTTCAAAAATGTTACAATATGATCCAAATCAAAGAATTACTGCTGCTGC
TGCTTTAAAACATCCTTATTTCGATGGTTTAGAACCTATTAATTAAATTAATTTTTTTTT
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAACAAAAAAAAAAAAA
sequence update 1997.11. 1
Translated Amino Acid sequence
---LHRDLKPQNLLINRKGELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKY
STPIDIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFKILGTPNEESWPSITELPEYKTDF
PVHPAHQLSSIVHGLDEKGLNLLSKMLQYDPNQRITAAAALKHPYFDGLEPIN*infffl
kkkkkkkkkkkikqkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---fyigi*nhkif*liekvn*n*rilv*qehlvyqlehihmk**hygiehqmc*wdqes
iqlqlisgqqvvflqrwhqvdhyslvqeqvincleylrywelqmkrvghqllnyqnikli
slyillinyhqsymvsmkkv*iyfqkcynmiqikellllll*nilismv*nlliklifff
*kkkkkkkkkkklnkkkk


Frame B:
---ft*gfkttksfn**kr*ikisgfwfsksiwyts*nift*ssnimv*strcvdgikkv
fnsn*ylvsrlyfcrdgir*tiipwfrnk*siv*ni*dignsk*relainy*itri*n*f
pctscssiiinrtwsr*krfkftfknvti*sksknyccccfktslfrwfrty*ln*ffff
kkkkkkkkkkkn*tkkkk


Frame C:
---LHRDLKPQNLLINRKGELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKY
STPIDIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFKILGTPNEESWPSITELPEYKTDF
PVHPAHQLSSIVHGLDEKGLNLLSKMLQYDPNQRITAAAALKHPYFDGLEPIN*infffl
kkkkkkkkkkkikqkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK433 (SSK433Q) /CSM/SS/SSK4-B/SSK433Q.Seq.d/ 1033 0.0
SSF544 (SSF544Q) /CSM/SS/SSF5-B/SSF544Q.Seq.d/ 1033 0.0
SSC188 (SSC188Q) /CSM/SS/SSC1-D/SSC188Q.Seq.d/ 1013 0.0
SSJ587 (SSJ587Q) /CSM/SS/SSJ5-D/SSJ587Q.Seq.d/ 993 0.0
VSI573 (VSI573Q) /CSM/VS/VSI5-D/VSI573Q.Seq.d/ 805 0.0
SSL292 (SSL292Q) /CSM/SS/SSL2-D/SSL292Q.Seq.d/ 662 0.0
VSG496 (VSG496Q) /CSM/VS/VSG4-D/VSG496Q.Seq.d/ 446 e-124
SSK330 (SSK330Q) /CSM/SS/SSK3-B/SSK330Q.Seq.d/ 232 5e-60
VSB286 (VSB286Q) /CSM/VS/VSB2-D/VSB286Q.Seq.d/ 125 8e-28
VSD854 (VSD854Q) /CSM/VS/VSD8-C/VSD854Q.Seq.d/ 70 4e-11

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L00652|L00652.1 Dictyostelium discoideum (crp) gene, complete cds. 993 0.0 1
BG224845|BG224845.1 kp51c06.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:C07G1.3 CE06779 SER/THR PROTEIN KINASE ;, mRNA sequence. 98 2e-34 2
AW588128|AW588128.1 kp19e04.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:X66360 SERINE/THREONINE-PROTEIN KINASE PCTAIRE-2 (HUMAN);, mRNA sequence. 98 2e-34 2
AJ224152|AJ224152.1 Plasmodium berghei gene encoding cdc2-related kinase 2. 90 2e-29 4
BM170937|BM170937.1 EST573460 PyBS Plasmodium yoelii yoelii cDNA clone PYCQN35 5' end, mRNA sequence. 74 3e-27 3
X61921|X61921.1 P.falciparum pfc2 gene for p34cdc2 protein kinase. 84 6e-15 3
AA550233|AA550233.1 1353m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1353m, mRNA sequence. 84 1e-14 2
M76585|M76585.1 Candida albicans protein kinase (ERK1) gene, complete cds. 48 7e-13 5
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 84 3e-12 1
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P2. 84 3e-12 1
dna update 2004. 2.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34117) RecName: Full=Cell division protein kinase 5 homolog; ... 353 1e-96
L00652_1(L00652|pid:none) Dictyostelium discoideum (crp) gene, c... 350 2e-95
(Q9XZD6) RecName: Full=Cell division control protein 2 homolog; ... 256 3e-67
(Q4Y4B1) RecName: Full=Cell division control protein 2 homolog; ... 256 4e-67
AJ224152_1(AJ224152|pid:none) Plasmodium berghei gene encoding c... 254 9e-67
(P29618) RecName: Full=Cyclin-dependent kinase A-1; Sho... 244 1e-63
FB667479_1(FB667479|pid:none) Sequence 1 from Patent WO2007141189. 244 1e-63
AC113930_15(AC113930|pid:none) Oryza sativa (japonica cultivar-g... 244 2e-63
DQ988342_1(DQ988342|pid:none) Larix x marschlinsii cdc2 protein ... 242 6e-63
EF081595_1(EF081595|pid:none) Picea sitchensis clone WS02710_M08... 242 6e-63
protein update 2009. 6.11
PSORT

psg: 0.57 gvh: 0.57 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SSF544 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSF544Z
3' end seq.
>SSF544Z.Seq
----------GTTTTACATAGGGATTTAAAACCACAAAATCTTTTAATTAATAGAAAAGG
TGAATTAAAATTAGCGGATTTTGGTTTAGCAAGAGCATTTGGTATACCAGTTAGAACATA
TTCACATGAAGTAGTAACATTATGGTATAGAGCACCAGATGTGTTGATGGGATCAAGAAA
GTATTCAACTCCAATTGATATCTGGTCAGCAGGTTGTATTTTTGCAGAGATGGCATCAGG
TAGACCATTATTCCCTGGTTCAGGAACAAGTGATCAATTGTTTAGAATATTTAAGATATT
GGGAACTCCAAATGAAGAGAGTTGGCCATCAATTACTGAATTACCAGAATATAAAACTGA
TTTCCCTGTACATCCTGCTCATCAATTATCATCAATCGTACATGGTCTCGATGAAAAAGG
TTTAAATTTACTTTCAAAAATGTTACAATATGATCCAAATCAAAGAATTACTGCTGCTGC
TGCTTTAAAACATCCTTATTTCGATGGTTTAGAACCTATTAATTAAATTAATTTTTTTTT
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAACAAAAAAAAAAAAA
Length of 3' end seq. 587
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -