>SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/
XXXXXXXXXXAAAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTAT
TAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTAT
GTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAA
TTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATG
AAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTG
ATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATA
TTGATACTCTTTAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGC
TGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAAAAAAAAAAAACAACATTTAA
CTCTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAATT
AAAAAAAAAAAAAAGATATAAAAAAAAAAATAAAAA

---KRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILI
QLRDYQNDKADVILRYNVDEARNLKTYGELPETARINETDAFDDVEDIPFEFVAEDDIDI
DTL*tktlfiyrnikqylml*ynsnraklsppkkkkqhltlfffy*nkkkkririgykn*
kkkkdikkkik

Frame A:
---KRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILI
QLRDYQNDKADVILRYNVDEARNLKTYGELPETARINETDAFDDVEDIPFEFVAEDDIDI
DTL*tktlfiyrnikqylml*ynsnraklsppkkkkqhltlfffy*nkkkkririgykn*
kkkkdikkkik


Frame B:
---renfnskkkaknmlky*ec*vmvv*kplvlmvknvyvtlvvd*errngstmvisf*f
nlettkmiklmlsfvtmsmklvilklmvnyqkplelmklmhlmmlkifhsnsllkmisil
ilfkqrhylyieilnsi*ccsiivteqnyppqkkknni*lffffietkkkkg*glvikik
kkkki*kkk*k


Frame C:
---ertsiqrrrpricssiknvr*wsfrsllf*w*ktfmsh*w*ikkegmdqqw*yhfns
t*rlpk**s*cypslqcr*ss*s*nlw*itrnr*n**n*ci**c*rysirirc*r*yry*
yslnkdiiyi*ky*tvfnavv***qskiippkkkkttfnsfffllkqkkkkdkdwl*klk
kkkrykkknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF521 (VSF521Q) /CSM/VS/VSF5-A/VSF521Q.Seq.d/                        886   0.0
VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/                        886   0.0
SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/                        886   0.0
SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/                        886   0.0
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Seq.d/                      886   0.0
AHL228 (AHL228Q) /CSM/AH/AHL2-B/AHL228Q.Seq.d/                        844   0.0
SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/                        775   0.0
SSL769 (SSL769Q) /CSM/SS/SSL7-C/SSL769Q.Seq.d/                        620   e-177
VSC777 (VSC777Q) /CSM/VS/VSC7-D/VSC777Q.Seq.d/                        418   e-116
VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/                        389   e-107

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF294231|BF294231.1 001PbG02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara FrontaliPlasmodium berghei cDNA 5', mRNA sequence.    70   2e-16  2
T18202|T18202.1 0812c3 czapPFDd2.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone 0812c 5', mRNA sequence.    74   1e-11  2
BU774280|BU774280.1 SJEGJC11 SJE Schistosoma japonicum cDNA, mRNA sequence.    50   6e-11  2
BU766517|BU766517.1 SJEAHA06 SJE Schistosoma japonicum cDNA, mRNA sequence.    50   6e-11  2
CB909835|CB909835.1 USDA-FP_101578 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-22_F01 5', mRNA sequence.    48   9e-11  3
AJ502640|AJ502640.1 Medicago truncatula EST, clone mtgmadc120023d09.    62   8e-10  2
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    74   2e-09  10
CF588392|CF588392.1 USDA-FP_120700-094 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-004_F11 5', mRNA sequence.    50   2e-08  4
CD535276|CD535276.1 LeukoN5_1_A08.g1_A027 Unstimulated peripheral blood leukocytes N5 Equus caballus cDNA clone LeukoN5_1_A08_A027 5', mRNA sequence.    50   4e-08  3
BU720240|BU720240.1 SJM2APF12 SJM Schistosoma japonicum cDNA, mRNA sequence.    48   7e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT047385_1(BT047385|pid:none) Salmo salar clone ssal-evd-517-113...   169   5e-41
BT046728_1(BT046728|pid:none) Salmo salar clone ssal-evd-566-043...   169   6e-41
AY911362_1(AY911362|pid:none) Bos taurus clone IMAGE:7961501 X-l...   167   1e-40
BT049466_1(BT049466|pid:none) Salmo salar clone ssal-evd-532-334...   167   2e-40
BT050065_1(BT050065|pid:none) Salmo salar clone ssal-evd-558-268...   167   2e-40
AK030774_1(AK030774|pid:none) Mus musculus 8 days embryo whole b...   167   2e-40
BT049173_1(BT049173|pid:none) Salmo salar clone ssal-eve-526-175...   167   2e-40
AM910991_409(AM910991|pid:none) Plasmodium knowlesi strain H chr...   167   2e-40
(P47813) RecName: Full=Eukaryotic translation initiation factor ...   166   3e-40
AY891749_1(AY891749|pid:none) Synthetic construct Homo sapiens c...   166   3e-40

 psg: 0.66  gvh: 0.37  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SSF521 is cyt

>SSF521Z.Seq
----------AAAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTAT
TAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTAT
GTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAA
TTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATG
AAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTG
ATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATA
TTGATACTCTTTAAACAAAGACATTATTTATATATAGAAATATTAAACAGTATTTAATGC
TGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAAAAAAAAAAAACAACATTTAA
CTCTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAATT
AAAAAAAAAAAAAAGATATAAAAAAAAAAATAAAAA