SSF514 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSF514
Library	SS (Link to library)
Clone ID	SSF514 (Link to dictyBase)
Atlas ID	-
NBRP ID	G02222
dictyBase ID	DDB0231140
Link to Contig	Contig-U14690-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSF5-A/SSF514Q.Seq.d/
Representative seq. ID	SSF514E (Link to Original site)
Representative DNA sequence	>SSF514 (SSF514Q) /CSM/SS/SSF5-A/SSF514Q.Seq.d/ AAAAAAAATATAATTTTCATTAAATATTAAACATAAAACATTAAATATTTATTTATTTAT TATTTTAAATCCTATTAAATTTTATATTTATTTATTTATCAAAAAAAAAAAAAGAAAAAA AGAAAAATAAAAAATGAAATTATTATATTCATTAGTTGCATTATTAGGTGTTTCATCAGT TGCATTTGGTGATACCAGTTGTAATCAATTACTTTCATCATTAGCTGATCCATCAAAATG TGTTCAAGTTTCAATCTCTGGTGTTCATTATCAATCATTGGCTCAAGAAGGTTATAAAGG TAATTTAGTTTTTGCATCTGGTGAATTTGTATTAAGGGAATCATTATACAATTTACAAAC CTATGAAACAACATGTAGTTCTCGTGGATTAGTTCAACCATTTGCAGCTGATTATCAATT CCGTGTTGATGATTTTAGTATTAGATTAAGTGATGGTAATCTTAGATTAAAACAAACTAA TACTCAACTTACTTGTAATGGTAATGTTGGTTTCTTCAATTTAAATAACTTTTATTATAC AGTTGCATTAAAATCATATGATACATGTCCAAAACTTAATTATGGTGAACCTTGTAATAC ACCAACAGTTACTCCAACAGTTACACCAACACCAACAGTTGCTCCAACAACACCACCAGT TGGAAAATTATAAATTAGATACTGATAGTAATTGGGTAGCCAATGGTGTAACATATTATC AATATAAAAGTCACATTAACCAATAATGAAAGTTCACCAATTAAATCAATTGAAATTCAT TCTGATAATTGGAATCCAACTGAATTTTGGAATATTGTAAGAAGTCAAAAAACTGGTAAT TTAAGTTTCCCACCATTTGTTGTTAATCTTCAAGCTGGCGATTCTTTCTCATTTGGTTTT GTATCTGCAACTTTAAATCCATCATTTTCAACTGTTAAAATTGTTAAAGCTTAAAAATAA TCAATAACAATTATTATATATATAAATTTTATTTTATTATATATATATATCAATCTAACA ATTTATTTAAAAAATCCTTTTTATTCTATTAACTTTACAAATAAAAAAAAACTATAAA
sequence update	1999. 4. 7
Translated Amino Acid sequence	kkifslnikhktlniylfiilnpikfyiylfikkkkrkkekKMKLLYSLVALLGVSSV AFGDTSCNQLLSSLADPSKCVQVSISGVHYQSLAQEGYKGNLVFASGEFVLRESLYNLQT YETTCSSRGLVQPFAADYQFRVDDFSIRLSDGNLRLKQTNTQLTCNGNVGFFNLNNFYYT VALKSYDTCPKLNYGEPCNTPTVTPTVTPTPTVAPTTPPVGKLiry*lgsqwcnils ikshpimkvhqlnqlkfiliigiqlnfgilevkklvivshhlllifklailshlvl ylqlihhfqllkllklknnqqllyiilfyyiyisiqfikilfilltlqikknyk
Translated Amino Acid sequence (All Frames)	Frame A: kkniifikytnikylfiyyfksyilylfiyqkkkkkkrkikneiiifisciircfis ciwyqlsitfiissikmcssfnlwcslsiigsrrlrfsfciwicikgiiiqftn lnnmfswissticslsipc*fyikwsiktnystylwcwflqfkllly scikiiymsktlwtlytnsysnsytntnscsnnttswkiinilivigpmvhii nikvtltnnesspiksieihsdnwnptefwnivrsqktgnlsfppfvvnlqagdsfsfgf vsatlnpsfstvkivkaksitiiiyinfillyiyinltiylknpfysinftnkkkl Frame B: kkifslnikhktlniylfiilnpikfyiylfikkkkrkkekKMKLLYSLVALLGVSSV AFGDTSCNQLLSSLADPSKCVQVSISGVHYQSLAQEGYKGNLVFASGEFVLRESLYNLQT YETTCSSRGLVQPFAADYQFRVDDFSIRLSDGNLRLKQTNTQLTCNGNVGFFNLNNFYYT VALKSYDTCPKLNYGEPCNTPTVTPTVTPTPTVAPTTPPVGKLiry*lgsqwcnils ikshpimkvhqlnqlkfiliigiqlnfgilevkklvivshhlllifklailshlvl ylqlihhfqllkllklknnqqllyiilfyyiyisiqfikilfilltlqikknyk Frame C: kkynfhilnikhifiyllfillnfifiylskkkkekkknkknyyihlhyvfhql hlvipvvinyfhhlihqnvfkfqslvfiinhwlkkvikviflhlvnlygnhytiykp mkqhvvlvdfnhlqliinsvlmilvldvmvildnklilnllvmvmlvssiitfiiq lhnhmihvqnlimvnlvihqqllqqlhqhqqllqqhhqlenykldtdsnwvangvtyyq ykshinq*kftninnsflesnileyckksknwfkfpticcssswrffliwfc icnfksiifncncslkiinnnyyiykfyfiiyiyqsnnlfkksflfylykkkti
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSF514 (SSF514Q) /CSM/SS/SSF5-A/SSF514Q.Seq.d/ 1653 0.0 SSI288 (SSI288Q) /CSM/SS/SSI2-D/SSI288Q.Seq.d/ 767 0.0 SSG278 (SSG278Q) /CSM/SS/SSG2-D/SSG278Q.Seq.d/ 767 0.0 SLB247 (SLB247Q) /CSM/SL/SLB2-B/SLB247Q.Seq.d/ 767 0.0 CHR810 (CHR810Q) /CSM/CH/CHR8-A/CHR810Q.Seq.d/ 747 0.0 SSJ508 (SSJ508Q) /CSM/SS/SSJ5-A/SSJ508Q.Seq.d/ 666 0.0 SSF389 (SSF389Q) /CSM/SS/SSF3-D/SSF389Q.Seq.d/ 666 0.0 SSF312 (SSF312Q) /CSM/SS/SSF3-A/SSF312Q.Seq.d/ 666 0.0 SSJ626 (SSJ626Q) /CSM/SS/SSJ6-B/SSJ626Q.Seq.d/ 640 0.0 SLH463 (SLH463Q) /CSM/SL/SLH4-C/SLH463Q.Seq.d/ 585 e-166
own update	2002.12.12
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N M20909\|M20909.1 Dictyostelium discoideum cell surface glycoprotein PsA precursor (D19) gene, complete cds. 64 4e-06 2 X15980\|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region. 64 4e-06 2 AC121489\|AC121489.2 Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence. 50 0.059 1 AG020923\|AG020923.1 Oryza sativa DNA, 3' flanking sequence of Tos17 insertion, clone:H0211_1_302_1A. 50 0.059 1 AP004171\|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 38 0.11 13 AZ535637\|AZ535637.1 ENTCM47TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.23 1 AC125471\|AC125471.3 Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence. 50 0.28 2 AE016969\|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome. 36 0.29 10 AL136107\|AL136107.12 Human DNA sequence from clone RP1-157N22 on chromosome 6q22.32-23.2. 42 0.49 2 BH531967\|BH531967.1 BOGVI80TF BOGV Brassica oleracea genomic clone BOGVI80, DNA sequence. 34 0.60 3
dna update	2003. 9. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P22698) RecName: Full=Spore germination protein 270-11; &B3562... 37 1.6 (Q1RML2) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p... 35 3.5 AB369537_1(AB369537\|pid:none) Coturnix japonica plcz mRNA for ph... 34 7.8
protein update	2009. 3. 5
PSORT	psg: 0.93 gvh: 0.84 alm: 0.49 top: 0.20 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 24.0 %: extracellular, including cell wall 24.0 %: nuclear 20.0 %: cytoplasmic 12.0 %: endoplasmic reticulum 8.0 %: vacuolar 8.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for SSF514 is exc
5' end seq. ID	SSF514F
5' end seq.	>SSF514F.Seq AAAAAAAATATAATTTTCATTAAATATTAAACATAAAACATTAAATATTTATTTATTTAT TATTTTAAATCCTATTAAATTTTATATTTATTTATTTATCAAAAAAAAAAAAAGAAAAAA AGAAAAATAAAAAATGAAATTATTATATTCATTAGTTGCATTATTAGGTGTTTCATCAGT TGCATTTGGTGATACCAGTTGTAATCAATTACTTTCATCATTAGCTGATCCATCAAAATG TGTTCAAGTTTCAATCTCTGGTGTTCATTATCAATCATTGGCTCAAGAAGGTTATAAAGG TAATTTAGTTTTTGCATCTGGTGAATTTGTATTAAGGGAATCATTATACAATTTACAAAC CTATGAAACAACATGTAGTTCTCGTGGATTAGTTCAACCATTTGCAGCTGATTATCAATT CCGTGTTGATGATTTTAGTATTAGATTAAGTGATGGTAATCTTAGATTAAAACAAACTAA TACTCAACTTACTTGTAATGGTAATGTTGGTTTCTTCAATTTAAATAACTTTTATTATAC AGTTGCATTAAAATCATATGATACATGTCCAAAACTTAATTATGGTGAACCTTGTAATAC ACCAACAGTTACTCCAACAGTTACACCAACACCAACAGTTGCTCCAACAACACCACCAGT TGGAACACCAAAAATCAATTATAAATTAGATACTGATAGTAATTGGGTGCCAATGGTGTA CATATTATCATATAA----------
Length of 5' end seq.	735
3' end seq. ID	SSF514Z
3' end seq.	>SSF514Z.Seq ----------AATTATAAATTAGATACTGATAGTAATTGGGTAGCCAATGGTGTAACATA TTATCAATATAAAGTCACATTAACCAATAATGAAAGTTCACCAATTAAATCAATTGAAAT TCATTCTGATAATTGGAATCCAACTGAATTTTGGAATATTGTAAGAAGTCAAAAAACTGG TAATTTAAGTTTCCCACCATTTGTTGTTAATCTTCAAGCTGGCGATTCTTTCTCATTTGG TTTTGTATCTGCAACTTTAAATCCATCATTTTCAACTGTTAAAATTGTTAAAGCTTAAAA ATAATCAATAACAATTATTATATATATAAATTTTATTTTATTATATATATATATCAATCT AACAATTTATTTAAAAAATCCTTTTTATTCTATTAACTTTACAAATAAAAAAAAACTATA AACAAAAAA
Length of 3' end seq.	419
Connected seq. ID	SSF514P
Connected seq.	>SSF514P.Seq AAAAAAAATATAATTTTCATTAAATATTAAACATAAAACATTAAATATTTATTTATTTAT TATTTTAAATCCTATTAAATTTTATATTTATTTATTTATCAAAAAAAAAAAAAGAAAAAA AGAAAAATAAAAAATGAAATTATTATATTCATTAGTTGCATTATTAGGTGTTTCATCAGT TGCATTTGGTGATACCAGTTGTAATCAATTACTTTCATCATTAGCTGATCCATCAAAATG TGTTCAAGTTTCAATCTCTGGTGTTCATTATCAATCATTGGCTCAAGAAGGTTATAAAGG TAATTTAGTTTTTGCATCTGGTGAATTTGTATTAAGGGAATCATTATACAATTTACAAAC CTATGAAACAACATGTAGTTCTCGTGGATTAGTTCAACCATTTGCAGCTGATTATCAATT CCGTGTTGATGATTTTAGTATTAGATTAAGTGATGGTAATCTTAGATTAAAACAAACTAA TACTCAACTTACTTGTAATGGTAATGTTGGTTTCTTCAATTTAAATAACTTTTATTATAC AGTTGCATTAAAATCATATGATACATGTCCAAAACTTAATTATGGTGAACCTTGTAATAC ACCAACAGTTACTCCAACAGTTACACCAACACCAACAGTTGCTCCAACAACACCACCAGT TGGAACACCAAAAATCAATTATAAATTAGATACTGATAGTAATTGGGTGCCAATGGTGTA CATATTATCATATAA----------AATTATAAATTAGATACTGATAGTAATTGGGTAGC CAATGGTGTAACATATTATCAATATAAAGTCACATTAACCAATAATGAAAGTTCACCAAT TAAATCAATTGAAATTCATTCTGATAATTGGAATCCAACTGAATTTTGGAATATTGTAAG AAGTCAAAAAACTGGTAATTTAAGTTTCCCACCATTTGTTGTTAATCTTCAAGCTGGCGA TTCTTTCTCATTTGGTTTTGTATCTGCAACTTTAAATCCATCATTTTCAACTGTTAAAAT TGTTAAAGCTTAAAAATAATCAATAACAATTATTATATATATAAATTTTATTTTATTATA TATATATATCAATCTAACAATTTATTTAAAAAATCCTTTTTATTCTATTAACTTTACAAA TAAAAAAAAACTATAAACAAAAAA
Length of connected seq.	1154
Full length Seq ID	SSF514E
Full length Seq.	>SSF514E.Seq AAAAAAAATATAATTTTCATTAAATATTAAACATAAAACATTAAATATTTATTTATTTAT TATTTTAAATCCTATTAAATTTTATATTTATTTATTTATCAAAAAAAAAAAAAGAAAAAA AGAAAAATAAAAAATGAAATTATTATATTCATTAGTTGCATTATTAGGTGTTTCATCAGT TGCATTTGGTGATACCAGTTGTAATCAATTACTTTCATCATTAGCTGATCCATCAAAATG TGTTCAAGTTTCAATCTCTGGTGTTCATTATCAATCATTGGCTCAAGAAGGTTATAAAGG TAATTTAGTTTTTGCATCTGGTGAATTTGTATTAAGGGAATCATTATACAATTTACAAAC CTATGAAACAACATGTAGTTCTCGTGGATTAGTTCAACCATTTGCAGCTGATTATCAATT CCGTGTTGATGATTTTAGTATTAGATTAAGTGATGGTAATCTTAGATTAAAACAAACTAA TACTCAACTTACTTGTAATGGTAATGTTGGTTTCTTCAATTTAAATAACTTTTATTATAC AGTTGCATTAAAATCATATGATACATGTCCAAAACTTAATTATGGTGAACCTTGTAATAC ACCAACAGTTACTCCAACAGTTACACCAACACCAACAGTTGCTCCAACAACACCACCAGT TGGAAAATTATAAATTAGATACTGATAGTAATTGGGTAGCCAATGGTGTAACATATTATC AATATAAAAGTCACATTAACCAATAATGAAAGTTCACCAATTAAATCAATTGAAATTCAT TCTGATAATTGGAATCCAACTGAATTTTGGAATATTGTAAGAAGTCAAAAAACTGGTAAT TTAAGTTTCCCACCATTTGTTGTTAATCTTCAAGCTGGCGATTCTTTCTCATTTGGTTTT GTATCTGCAACTTTAAATCCATCATTTTCAACTGTTAAAATTGTTAAAGCTTAAAAATAA TCAATAACAATTATTATATATATAAATTTTATTTTATTATATATATATATCAATCTAACA ATTTATTTAAAAAATCCTTTTTATTCTATTAACTTTACAAATAAAAAAAAACTATAAA
Length of full length seq.	1078

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas