>SSF511 (SSF511Q) /CSM/SS/SSF5-A/SSF511Q.Seq.d/
XXXXXXXXXXCCTGAAGCAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGC
AGTCTATTCATACAAACACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGC
AGAAGAACAACAACAACAACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCA
TCACGATAGTCACGCAAACGATGGTCACCATGATGAACACCATGATGAACACCACGATCA
TGTTAATCCAGATGATGTTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACC
ATCAGTACCATACCCAATGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCAT
TGGTTCATTATTTTCAATACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATT
TAGAAGCGAATACTTGGAAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCA
CAAATATCCATTATCTCATTAAATTCGATAAATAATTTTTTAAAAAAATAATACATATAA
AAAGAATAATAATACAGTTAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAA
ATTTAAAAAAAA

---EAGTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHH
DSHANDGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIG
SLFSIRYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*knntykk
nnntvkviqkl*kifktqkfkk

Frame A:
---lkqvhk*lqee*nlvtqsihtnteillliqfklen*qknnnnnnimfmvqvvhmaii
tivtqtmvtmmntmmnttimliqmmlkmnsqevtf*ihhhqyhtq*ihti*qlfvyfqsl
vhyfqyviliinqktimnyleantwkqiqhsnknitisptnihylikfdk*ffkkiihik
riiiqlk*yrncrkysklknlkk


Frame B:
---*srytndykksriw*rslfiqtrkfyc*snsn*risrrttttttscswsrlftwpss
r*srkrwsp**tp**tprsc*sr*c*r*ipkrllfkyttistipnesilfnsslftsnhw
fiifntlf***irkrl*ii*krilgsksstqtkilryhpqisiislnsinnflkk*yi*k
e**ys*snteiveniqnski*kk


Frame C:
---EAGTQMITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHH
DSHANDGHHDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIG
SLFSIRYFDNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*knntykk
nnntvkviqkl*kifktqkfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF511 (SSF511Q) /CSM/SS/SSF5-A/SSF511Q.Seq.d/                        870   0.0
SSK578 (SSK578Q) /CSM/SS/SSK5-D/SSK578Q.Seq.d/                        860   0.0
FC-AS05 (FC-AS05Q) /CSM/FC/FC-AS/FC-AS05Q.Seq.d/                      860   0.0
FC-301 (FC-301Q) /CSM/CG/CG-FC/FC-301Q.Seq.d/                         860   0.0
FC-AV08 (FC-AV08Q) /CSM/FC/FC-AV/FC-AV08Q.Seq.d/                      640   0.0
SLC336 (SLC336Q) /CSM/SL/SLC3-B/SLC336Q.Seq.d/                         40   0.039
SHG322 (SHG322Q) /CSM/SH/SHG3-A/SHG322Q.Seq.d/                         40   0.039
CHR274 (CHR274Q) /CSM/CH/CHR2-D/CHR274Q.Seq.d/                         40   0.039
CHJ854 (CHJ854Q) /CSM/CH/CHJ8-C/CHJ854Q.Seq.d/                         40   0.039
CHC276 (CHC276Q) /CSM/CH/CHC2-D/CHC276Q.Seq.d/                         40   0.039

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   7e-04  22
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   0.001  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.019  10
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  42   0.022  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    30   0.027  14
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    34   0.037  11
AC023852|AC023852.3 Homo sapiens chromosome 8 clone RP11-106J22 map 8, LOW-PASS SEQUENCE SAMPLING.    38   0.057  5
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    32   0.058  10
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    36   0.058  10
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    30   0.064  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN4) RecName: Full=Uncharacterized transmembrane protein DDB...   223   4e-57
AY338732_1(AY338732|pid:none) Avian infectious bronchitis virus ...    34   2.8
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    34   3.6
CP001055_1360(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    33   4.7
Z69629_1(Z69629|pid:none) Infectious bronchitis virus RNA (defec...    33   6.2
Z30541_1(Z30541|pid:none) Avian infectious bronchitis virus mRNA...    33   6.2
AY319651_1(AY319651|pid:none) Avian infectious bronchitis virus ...    33   6.2
FJ807652_2(FJ807652|pid:none) Infectious bronchitis virus strain...    33   6.2
(P0C6Y1) RecName: Full=Replicase polyprotein 1ab;          Short...    33   6.2
AY641576_1(AY641576|pid:none) Avian infectious bronchitis virus ...    33   6.2

 psg: 0.69  gvh: 0.30  alm: 0.29  top: 0.73  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSF511 is nuc

>SSF511Z.Seq
----------CCTGAAGCAGGTACACAAATGATTACAAGAAGAGTAGAATTTGGTGACGC
AGTCTATTCATACAAACACGGAAATTTTATTGTTGATCCAATTCAAATTAGAGAATTAGC
AGAAGAACAACAACAACAACAACATCATGTTCATGGTCCAGGTTGTTCACATGGCCATCA
TCACGATAGTCACGCAAACGATGGTCACCATGATGAACACCATGATGAACACCACGATCA
TGTTAATCCAGATGATGTTGAAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACC
ATCAGTACCATACCCAATGAATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCAT
TGGTTCATTATTTTCAATACGTTATTTTGATAATAAATCAGAAAACGATTATGAATTATT
TAGAAGCGAATACTTGGAAGCAAATCCAGCACTCAAACAAAAATATTACGATATCACCCA
CAAATATCCATTATCTCATTAAATTCGATAAATAATTTTTTAAAAAAATAATACATATAA
AAAGAATAATAATACAGTTAAAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAA
ATTTAAAAAAAA