AFL275
Library AF
(Link to library)
Clone ID AFL275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09875-1
Original site URL
Representative seq. ID AFL275Z
(Link to Original site)
Representative DNA sequence
>AFL275 (AFL275Q) /CSM/AF/AFL2-D/AFL275Q.Seq.d/
XXXXXXXXXXCAATCGTTCAGTTGAAGCNGAANCNGTCTCCAAAACAGGTAAATCTTATG
CTTTCAGTGGTTCAACTTCAACCTTACCAGCCTTCATTCGTGTTCCAGGTGCCCTTAAAA
CTGATACCATTGTTTTTGATTCTGTCAATGGATGGCAACAAGTCGATGTAGTAGGTGCAT
CACCAACCCCAAGAGCTCATCATCATTTACACTATAATGAAGAATTAGATTCAATTTTCA
CCTATGGCGGCTATACCAATTGTAGTACCTACACCACCAATGAATGTAATTATCTTGGCG
ATTTATGGAGTCTTGATTTATCAACAAAAGTTTGGAAGCAACATCTCTTTGATGTAACCA
AAGGACCAGGAAATAGAGATAATGCCAAATTCATTTATTCCGATCAAAATCAACTTTTCT
TAATTGGTGGAAGTAATTATCAATACACCAACTTTATGGATGTATGGCGTTTTGATTCAA
TTACAAATGAATGGACTCAATTAACCATTTTACCATTAGTTGATCCAGAAACTTATATTC
AAACTCCAATTCCAAGTACAATCGGTAGCTTCTATTTCAAACATATCAGAAAATGTAGTG
TAGAATTTACTTTAGCAGAGGTTCACTCAGNAAATTTCAGGAAGTCCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---NRSVEAEXVSKTGKSYAFSGSTSTLPAFIRVPGALKTDTIVFDSVNGWQQVDVVGAS
PTPRAHHHLHYNEELDSIFTYGGYTNCSTYTTNECNYLGDLWSLDLSTKVWKQHLFDVTK
GPGNRDNAKFIYSDQNQLFLIGGSNYQYTNFMDVWRFDSITNEWTQLTILPLVDPETYIQ
TPIPSTIGSFYFKHIRKCSVEFTLAEVHSXNFRKS


Translated Amino Acid sequence (All Frames)
Frame A:
---NRSVEAEXVSKTGKSYAFSGSTSTLPAFIRVPGALKTDTIVFDSVNGWQQVDVVGAS
PTPRAHHHLHYNEELDSIFTYGGYTNCSTYTTNECNYLGDLWSLDLSTKVWKQHLFDVTK
GPGNRDNAKFIYSDQNQLFLIGGSNYQYTNFMDVWRFDSITNEWTQLTILPLVDPETYIQ
TPIPSTIGSFYFKHIRKCSVEFTLAEVHSXNFRKS


Frame B:
---ivqlkxxxspkqvnlmlsvvqlqpyqpsfvfqvplkliplflilsmdgnksm**vhh
qpqeliiiytimkn*iqfspmaaipivvptppmnviilaiygvliyqqkfgsnislm*pk
dqeieimpnsfipikinfs*lveviintptlwmygvliqlqmngln*pfyh*liqklifk
lqfqvqsvasisnisenvv*nll*qrftqxisgsp


Frame C:
---sfs*sxxxlqnr*ilcfqwfnfnltslhscsrcp*n*yhcf*fcqwmatsrcsrcit
npkssssftl**rirfnfhlwrlyql*ylhhq*m*lswrfmes*finksleatsl*cnqr
trk*r*cqihlfrskstflnwwk*lsihqlygcmaf*fnyk*mdsinhftis*srnlysn
snskynr*llfqtyqkm*criyfsrgslxkfqevh


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL275 (AFL275Q) /CSM/AF/AFL2-D/AFL275Q.Seq.d/ 1243 0.0
VFO833 (VFO833Q) /CSM/VF/VFO8-B/VFO833Q.Seq.d/ 1235 0.0
VFK331 (VFK331Q) /CSM/VF/VFK3-B/VFK331Q.Seq.d/ 1235 0.0
VFB257 (VFB257Q) /CSM/VF/VFB2-C/VFB257Q.Seq.d/ 1235 0.0
VFA714 (VFA714Q) /CSM/VF/VFA7-A/VFA714Q.Seq.d/ 1229 0.0
VFJ880 (VFJ880Q) /CSM/VF/VFJ8-D/VFJ880Q.Seq.d/ 1227 0.0
VFG609 (VFG609Q) /CSM/VF/VFG6-A/VFG609Q.Seq.d/ 1221 0.0
VFF560 (VFF560Q) /CSM/VF/VFF5-C/VFF560Q.Seq.d/ 1221 0.0
VFF239 (VFF239Q) /CSM/VF/VFF2-B/VFF239Q.Seq.d/ 1221 0.0
VFD781 (VFD781Q) /CSM/VF/VFD7-D/VFD781Q.Seq.d/ 1221 0.0

own update 2004. 8.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 1152 0.0 3
AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10. 34 0.024 7
AC034120|AC034120.2 Homo sapiens chromosome 12 clone RP11-778E19 map 12, WORKING DRAFT SEQUENCE, 30 unordered pieces. 40 1.5 7
AC150448|AC150448.1 Pan troglodytes clone CH251-35E6, WORKING DRAFT SEQUENCE, 9 unordered pieces. 36 1.8 6
AE017300|AE017300.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 14 of 14 of the complete sequence. 34 2.2 8
AC104442|AC104442.2 Homo sapiens chromosome 3 clone RP11-905F6, complete sequence. 44 2.8 1
AC079166|AC079166.3 Homo sapiens chromosome 3 clone RP11-103N20, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 44 2.8 1
AL161871|AL161871.6 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-66E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 44 2.8 1
AG180783|AG180783.1 Pan troglodytes DNA, clone: RP43-053H11.T7. 44 2.8 1
AG180831|AG180831.1 Pan troglodytes DNA, clone: RP43-053I11.T7. 44 2.8 1
dna update 2004. 8.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116551_43(AC116551|pid:none) Dictyostelium discoideum chromoso... 414 e-114
AM746676_5484(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 151 1e-35
BC012312_1(BC012312|pid:none) Mus musculus kelch domain containi... 51 2e-05
BC058359_1(BC058359|pid:none) Mus musculus kelch domain containi... 51 2e-05
(Q921I2) RecName: Full=Kelch domain-containing protein 4; &BC02... 51 2e-05
BC062489_1(BC062489|pid:none) Xenopus tropicalis kelch domain co... 50 5e-05
AB055250_1(AB055250|pid:none) Macaca fascicularis brain cDNA, cl... 50 7e-05
AE014298_1261(AE014298|pid:none) Drosophila melanogaster chromos... 49 1e-04
AK023986_1(AK023986|pid:none) Homo sapiens cDNA FLJ13924 fis, cl... 49 1e-04
(Q8TBB5) RecName: Full=Kelch domain-containing protein 4; &BC02... 49 1e-04
protein update 2009. 4.25
PSORT

psg: 0.75 gvh: 0.43 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for AFL275 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFL275Z
3' end seq.
>AFL275Z.Seq
----------CAATCGTTCAGTTGAAGCNGAANCNGTCTCCAAAACAGGTAAATCTTATG
CTTTCAGTGGTTCAACTTCAACCTTACCAGCCTTCATTCGTGTTCCAGGTGCCCTTAAAA
CTGATACCATTGTTTTTGATTCTGTCAATGGATGGCAACAAGTCGATGTAGTAGGTGCAT
CACCAACCCCAAGAGCTCATCATCATTTACACTATAATGAAGAATTAGATTCAATTTTCA
CCTATGGCGGCTATACCAATTGTAGTACCTACACCACCAATGAATGTAATTATCTTGGCG
ATTTATGGAGTCTTGATTTATCAACAAAAGTTTGGAAGCAACATCTCTTTGATGTAACCA
AAGGACCAGGAAATAGAGATAATGCCAAATTCATTTATTCCGATCAAAATCAACTTTTCT
TAATTGGTGGAAGTAATTATCAATACACCAACTTTATGGATGTATGGCGTTTTGATTCAA
TTACAAATGAATGGACTCAATTAACCATTTTACCATTAGTTGATCCAGAAACTTATATTC
AAACTCCAATTCCAAGTACAATCGGTAGCTTCTATTTCAAACATATCAGAAAATGTAGTG
TAGAATTTACTTTAGCAGAGGTTCACTCAGNAAATTTCAGGAAGTCCAT
Length of 3' end seq. 639
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -