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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF509
Library SS
(Link to library)
Clone ID SSF509
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16352-1
Original site URL
Representative seq. ID SSF509E
(Link to Original site)
Representative DNA sequence 
>SSF509 (SSF509Q) /CSM/SS/SSF5-A/SSF509Q.Seq.d/
GTACTATTAAACTAAATTCTAAAATGTTATTCAAATCATTACAATCAATCTCAAGTGTTA
GCTCAGTCCAAAAGAATCAAATTTCTTCAATTTCAGTAGGAAGCACTCAATCTAACAATA
ATGCTGCTCTCTTAGATGCTGCTGCACTCGTTGTAATTCCAGGTTTATTAACTGCTGCTG
CTGTTGCCCATATTTAAATCTTTAAGGATTAATTAAACCAATTACCAATATTTCATTCAT
TTTTAATTTATATTATATATCATTGTGTGTGTATTTTTTGAAAGCTCTATTTTTATATAG
TAAATCCATATTAAAAATAAATAAAATTAAATAATTGTTAACAAAAAAA
sequence update 1997.11. 1
Translated Amino Acid sequence 
TIKLNSKMLFKSLQSISSVSSVQKNQISSISVGSTQSNNNAALLDAAALVVIPGLLTAAA
VAHI*ifkd*lnqlpifhsfliyiiyhcvcif*klyfyivnpy*k*iklnnc*qk
Translated Amino Acid sequence (All Frames) 
Frame A:
vlln*ilkcysnhynqsqvlaqskrikflqfq*ealnltimlls*mllhsl*fqvy*lll
llpifkslrin*tnyqyfihf*filyiivcvffessifi**ihiknk*n*iivnkk


Frame B:
yy*tkf*nviqiitinlkc*lspkesnffnfsrkhsi*q*ccslrccctrcnsrfinccc
ccpylnl*glikpitnisfifnlyyislcvyflkalflysksilkinkik*lltkk


Frame C:
TIKLNSKMLFKSLQSISSVSSVQKNQISSISVGSTQSNNNAALLDAAALVVIPGLLTAAA
VAHI*ifkd*lnqlpifhsfliyiiyhcvcif*klyfyivnpy*k*iklnnc*qk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF509 (SSF509Q) /CSM/SS/SSF5-A/SSF509Q.Seq.d/                        450   e-126
SSE588 (SSE588Q) /CSM/SS/SSE5-D/SSE588Q.Seq.d/                        450   e-126
SSA615 (SSA615Q) /CSM/SS/SSA6-A/SSA615Q.Seq.d/                        450   e-126
SHG868 (SHG868Q) /CSM/SH/SHG8-C/SHG868Q.Seq.d/                        450   e-126
SSE247 (SSE247Q) /CSM/SS/SSE2-B/SSE247Q.Seq.d/                        440   e-123
SHH448 (SHH448Q) /CSM/SH/SHH4-B/SHH448Q.Seq.d/                        389   e-107
CHN336 (CHN336Q) /CSM/CH/CHN3-B/CHN336Q.Seq.d/                        389   e-107
SSH384 (SSH384Q) /CSM/SS/SSH3-D/SSH384Q.Seq.d/                        379   e-104
SSL794 (SSL794Q) /CSM/SS/SSL7-D/SSL794Q.Seq.d/                        373   e-102
SSL434 (SSL434Q) /CSM/SS/SSL4-B/SSL434Q.Seq.d/                        359   2e-98
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC080109|AC080109.1 Homo sapiens chromosome 4 clone RP11-322B12 map 4, LOW-PASS SEQUENCE SAMPLING.    46  0.13  3
AC105284|AC105284.1 Homo sapiens chromosome 4 clone RP11-1G8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.29  1
AC079960|AC079960.2 Homo sapiens chromosome 4 clone RP11-422D16 map 4, WORKING DRAFT SEQUENCE, 37 unordered pieces.    46  0.29  1
AC114770|AC114770.4 Homo sapiens BAC clone RP11-422D16 from 4, complete sequence.    46  0.29  1
AI757180|AI757180.1 EtESTea31c07.y1 Eimeria S5-2 Sporozoite stage Eimeria tenella cDNA 5', mRNA sequence.    32  2.9  2
AI759340|AI759340.1 EtESTea27d05.y1 Eimeria S5-2 Sporozoite stage Eimeria tenella cDNA 5', mRNA sequence.    32  3.1  2
BG516652|BG516652.1 EtESTed59d07.y1 Eimeria tenella S5-2 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence.    32  3.2  2
BG516015|BG516015.1 EtESTed47h06.y1 Eimeria tenella S5-2 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence.    32  3.2  2
CD345324|CD345324.1 EtESTef88b05.y1 Eimeria tenella S5-2 Excised cDNA Eimeria tenella cDNA 5', mRNA sequence.    32  3.4  2
AC121848|AC121848.3 Mus musculus chromosome 15 clone RP24-87G10, complete sequence.    42  3.5  3
dna update 2003. 9. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB...    36   0.37
FB789355_1(FB789355|pid:none) Sequence 8628 from Patent WO200803...    32   5.3
AY380581_1(AY380581|pid:none) Guaroa virus strain BeH22063 polyp...    32   6.9
protein update 2009. 3. 5
PSORT 

 psg: 0.87  gvh: 0.60  alm: 0.25  top: 0.63  tms: 0.07  mit: 0.44  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.26  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSF509 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSF509E
Full length Seq. 
>SSF509E.Seq
GTACTATTAAACTAAATTCTAAAATGTTATTCAAATCATTACAATCAATCTCAAGTGTTA
GCTCAGTCCAAAAGAATCAAATTTCTTCAATTTCAGTAGGAAGCACTCAATCTAACAATA
ATGCTGCTCTCTTAGATGCTGCTGCACTCGTTGTAATTCCAGGTTTATTAACTGCTGCTG
CTGTTGCCCATATTTAAATCTTTAAGGATTAATTAAACCAATTACCAATATTTCATTCAT
TTTTAATTTATATTATATATCATTGTGTGTGTATTTTTTGAAAGCTCTATTTTTATATAG
TAAATCCATATTAAAAATAAATAAAATTAAATAATTGTTAACAAAAAAA
Length of full length seq. 349