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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF507
Library SS
(Link to library)
Clone ID SSF507
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04633-1
Original site URL
Representative seq. ID SSF507E
(Link to Original site)
Representative DNA sequence 
>SSF507 (SSF507Q) /CSM/SS/SSF5-A/SSF507Q.Seq.d/
ATTAAATATAAAAAAATAATAATAGAAAAAATATAAAATCGTCAACTATTATTTAAATAA
TAAACACATATATAAATAGATAAATAAAAGAATGAGATTATTTTTATTATTATTATCAAT
TTTCAATTTCAACTNCAACTGTGAATGCATTGACTTGTGAATTATGTCAATTCTCAGTTA
AAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAAAGTCAAATTATTCCTTATTTAG
ATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATTGTAAATA
CCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAAGTTGCTTGTA
CTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGAAACTAAAAAAGAAACTTTAG
GAAAATGGCATTGGAATAAACACCATTTAAATCCAATCAAGAAATTAGAATGTAGTGCTT
GTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAATAAAGATATTAATACCGCAAGAG
CATATGTTGATGGCCAATGTGATACTTTTGCAATTAAAGAAGCTATTCATATTTGTAAAA
GAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACCATGAAAGTAAAG
AAACCGTTTGTAACGTTTGTAAACATATTCATATGTGTTAAAACTACTTTAATTGTATAT
ATATATAAAAAATAAATTATTTAAATAATTT
sequence update 1999. 4. 7
Translated Amino Acid sequence 
*i*knnnrkniksstii*iintyinr*ike*DYFYYYYQFSISTXTVNALTCELCQFSVK
AAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNTYGLSMIKLVLENETPEVACT
QLGLCGSNSFFTETKKETLGKWHWNKHHLNPIKKLECSACHFAVGKAENVVNKDINTARA
YVDGQCDTFAIKEAIHICKRIVDKEIGRIITELKNHESKETVCNVCKHIHMC*nyfnciy
i*kinylnn
Translated Amino Acid sequence (All Frames) 
Frame A:
ikykkiiieki*nrqllfk**thi*idk*kneiifiiiinfqfqlql*mh*lvnyvnsql
kqlki*lhkishkvklfli*iplvhyyqinglvivkll*ipmvyq*ln*y*kmkhqkllv
ln*vfvgqihslqklkkkl*engiginti*iqsrn*nvvlvilllvklkml*ikilipqe
hmlmanvillqlkklfifvkellikkleellln*rtmkvkkpfvtfvnificvkttlivy
iykk*ii*ii


Frame B:
lnikk***kkykivnyylnnkhiyk*inkrmrlfllllsifnfnxncecidl*imsils*
ss*rfsytkfhtksnyslfrfrlftitksmg**l*nyckylwfind*isirk*ntrscly
sirslwvkfilyrn*krnfrkmale*tpfksnqeirm*clsfccw*s*kcck*ry*yrks
ic*wpm*yfcn*rsysyl*knc**rnwknyy*ikep*k*rnrl*rl*tysyvlkll*lyi
yiknklfk*f


Frame C:
*i*knnnrkniksstii*iintyinr*ike*DYFYYYYQFSISTXTVNALTCELCQFSVK
AAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNTYGLSMIKLVLENETPEVACT
QLGLCGSNSFFTETKKETLGKWHWNKHHLNPIKKLECSACHFAVGKAENVVNKDINTARA
YVDGQCDTFAIKEAIHICKRIVDKEIGRIITELKNHESKETVCNVCKHIHMC*nyfnciy
i*kinylnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF507 (SSF507Q) /CSM/SS/SSF5-A/SSF507Q.Seq.d/                       1334   0.0
SSB874 (SSB874Q) /CSM/SS/SSB8-D/SSB874Q.Seq.d/                        458   e-128
SSL149 (SSL149Q) /CSM/SS/SSL1-C/SSL149Q.Seq.d/                         46   8e-04
SSK756 (SSK756Q) /CSM/SS/SSK7-C/SSK756Q.Seq.d/                         46   8e-04
SSF253 (SSF253Q) /CSM/SS/SSF2-C/SSF253Q.Seq.d/                         46   8e-04
SHF712 (SHF712Q) /CSM/SH/SHF7-A/SHF712Q.Seq.d/                         46   8e-04
VSH625 (VSH625Q) /CSM/VS/VSH6-B/VSH625Q.Seq.d/                         44   0.003
VSH448 (VSH448Q) /CSM/VS/VSH4-B/VSH448Q.Seq.d/                         44   0.003
VSB233 (VSB233Q) /CSM/VS/VSB2-B/VSB233Q.Seq.d/                         44   0.003
SSK687 (SSK687Q) /CSM/SS/SSK6-D/SSK687Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116924|AC116924.2 Dictyostelium discoideum chromosome 2 map 6199819-6206243 strain AX4, complete sequence.   944  0.0  5
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    44  1e-06  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          46  3e-06  5
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  4e-06  8
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  2e-05  4
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          44  4e-05  6
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    42  5e-05  5
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    46  8e-05  4
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    42  2e-04  5
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    46  2e-04  6
dna update 2003. 9. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom...   385   e-106
AY815893_1(AY815893|pid:none) Schistosoma japonicum SJCHGC01869 ...    79   2e-13
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid...    77   8e-13
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ...    74   5e-12
S21770(S21770)saposin-C - bovine                                       73   1e-11
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    70   5e-11
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    70   5e-11
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    70   5e-11
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ...    70   5e-11
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151.      70   5e-11
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSF507 is cyt
5' end seq. ID SSF507F
5' end seq. 
>SSF507F.Seq
ATTAAATATAAAAAAATAATAATAGAAAAAATATAAAATCGTCAACTATTATTTAAATAA
TAAACACATATATAAATAGATAAATAAAAGAATGAGATTATTTTTATTATTATTATCAAT
TTTAACAATTTCAACTACAACTGTGAATGCATTGACTTGTGAATTATGTCAATTCTCAGT
TAAAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAAAGTCAAATTATTCCTTATTT
AGATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATTGTAAA
TACCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAAGTTGCTTG
TACTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGAAACTAAAAAAGAAACTTT
AGGAAAATGGCATTGGAATAAACACCATTTAAATCCAATCAAGAAATTAGAATGTAGTGC
TTGTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAATAAAGATATTAATACCGCAAG
AGCATATGTTGATGGCCAATGTGATACTTTTGCAATTAAAGAAGCTATTCATATTTGTAA
AAGAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACCATGAAAGTAA
AGAAACCGTTTGTAA----------
Length of 5' end seq. 675
3' end seq. ID SSF507Z
3' end seq. 
>SSF507Z.Seq
----------CAATTTCAACTCCAACTGTGAATGCATTGACTTGTGAATTATGTCAATTC
TCAGTTAAAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAAAGTCAAATTATTCCT
TATTTAGATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATT
GTAAATACCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAAGTT
GCTTGTACTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGAAACTAAAAAAGAA
ACTTTAGGAAAATGGCATTGGAATAAACACCATTTAAATCCAATCAAGAAATTAGAATGT
AGTGCTTGTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAATAAAGATATTAATACC
GCAAGAGCATATGTTGATGGCCAATGTGATACTTTTGCAATTAANGAAGCTATTCATATT
TGTAAAAGAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACCATGAA
AGTAAAGAAACCGTTTGTAAACATATTCATATGTGTTAAAACTACTTTAATTGTATATAT
ATATAAAAAATAAATTATTTAAATAATTTTAAAATTGTA
Length of 3' end seq. 629
Connected seq. ID SSF507P
Connected seq. 
>SSF507P.Seq
ATTAAATATAAAAAAATAATAATAGAAAAAATATAAAATCGTCAACTATTATTTAAATAA
TAAACACATATATAAATAGATAAATAAAAGAATGAGATTATTTTTATTATTATTATCAAT
TTTAACAATTTCAACTACAACTGTGAATGCATTGACTTGTGAATTATGTCAATTCTCAGT
TAAAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAAAGTCAAATTATTCCTTATTT
AGATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATTGTAAA
TACCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAAGTTGCTTG
TACTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGAAACTAAAAAAGAAACTTT
AGGAAAATGGCATTGGAATAAACACCATTTAAATCCAATCAAGAAATTAGAATGTAGTGC
TTGTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAATAAAGATATTAATACCGCAAG
AGCATATGTTGATGGCCAATGTGATACTTTTGCAATTAAAGAAGCTATTCATATTTGTAA
AAGAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACCATGAAAGTAA
AGAAACCGTTTGTAA----------CAATTTCAACTCCAACTGTGAATGCATTGACTTGT
GAATTATGTCAATTCTCAGTTAAAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAA
AGTCAAATTATTCCTTATTTAGATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGT
AATTGTGAAATTATTGTAAATACCTATGGTTTATCAATGATTAAATTAGTATTAGAAAAT
GAAACACCAGAAGTTGCTTGTACTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACA
GAAACTAAAAAAGAAACTTTAGGAAAATGGCATTGGAATAAACACCATTTAAATCCAATC
AAGAAATTAGAATGTAGTGCTTGTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAAT
AAAGATATTAATACCGCAAGAGCATATGTTGATGGCCAATGTGATACTTTTGCAATTAAN
GAAGCTATTCATATTTGTAAAAGAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAA
TTAAAGAACCATGAAAGTAAAGAAACCGTTTGTAAACATATTCATATGTGTTAAAACTAC
TTTAATTGTATATATATATAAAAAATAAATTATTTAAATAATTTTAAAATTGTA
Length of connected seq. 1304
Full length Seq ID SSF507E
Full length Seq. 
>SSF507E.Seq
ATTAAATATAAAAAAATAATAATAGAAAAAATATAAAATCGTCAACTATTATTTAAATAA
TAAACACATATATAAATAGATAAATAAAAGAATGAGATTATTTTTATTATTATTATCAAT
TTTCAATTTCAACTNCAACTGTGAATGCATTGACTTGTGAATTATGTCAATTCTCAGTTA
AAGCAGCTGAAGATTTAGTTACACAAAATTTCACACAAAGTCAAATTATTCCTTATTTAG
ATTCCGCTTGTTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATTGTAAATA
CCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAAGTTGCTTGTA
CTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGAAACTAAAAAAGAAACTTTAG
GAAAATGGCATTGGAATAAACACCATTTAAATCCAATCAAGAAATTAGAATGTAGTGCTT
GTCATTTTGCTGTTGGTAAAGCTGAAAATGTTGTAAATAAAGATATTAATACCGCAAGAG
CATATGTTGATGGCCAATGTGATACTTTTGCAATTAAAGAAGCTATTCATATTTGTAAAA
GAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACCATGAAAGTAAAG
AAACCGTTTGTAACGTTTGTAAACATATTCATATGTGTTAAAACTACTTTAATTGTATAT
ATATATAAAAAATAAATTATTTAAATAATTT
Length of full length seq. 751